1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:1.82e-25:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS15965
Response regulator NarL family
uncultured Blautia sp. · GCF_900066335
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900066335#QZL78_RS15965Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 206 aa (74.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-201 aa · 52 aa · 25.2% of protein
Raw token
HTH_LUXR:150:2.72e-21:201:52:58- Raw architecture: Response_reg:3:1.82e-25:103:101:111#HTH_LUXR:150:2.72e-21:201:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900066335::NZ_FMEU01000029.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22533-24467Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_03176RefSeq proteinWP_021976197.1
Context group ID
GCF_900066335::NZ_FMEU01000029.1::G00018Context members
QZL78_RS15965QZL78_RS15970
Partner locus tags
QZL78_RS15965QZL78_RS15970
Partner old locus tags
SAMEA3545288_03176SAMEA3545288_03177
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021976197.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS15965Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_03176Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000029.1Sequence record reported by the local genomic context database.
Genomic interval22 533-23 153 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 533-24 467 ntGCF_900066335::NZ_FMEU01000029.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000029.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000029.1All displayed genes belong to this local TCS context.
Neighborhood span22 533-24 467 nt1 935 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 533 nt24 467 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QZL78_RS15965GCF_900066335#QZL78_RS15965
RRNarLCurrent focus
22 533-23 153 nt · Reverse (-)
QZL78_RS15970GCF_900066335#QZL78_RS15970
HKClassic
23 286-24 467 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003488505#DCZ78_RS08845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2083297
Simplified PFAM architecture for RROC_2083297
PFAM domain coverage: 154 / 206 aa (74.8%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[150-201]
- Domain count: 2
- Matched identifier: RROC_2083297
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 150-201 ; GerE 150-201
Cluster members and taxonomy
Representative gene: GCF_003488505#DCZ78_RS08845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key