1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:2.02e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS13370
Response regulator OmpR family
uncultured Blautia sp. · GCF_900066335
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900066335#QZL78_RS13370Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:7.97e-33:227:77:77- Raw architecture: Response_reg:4:2.02e-32:113:111:111#Trans_reg_C:151:7.97e-33:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900066335::NZ_FMEU01000018.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12828-14667Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_02667RefSeq proteinWP_021975785.1
Context group ID
GCF_900066335::NZ_FMEU01000018.1::G00046Context members
QZL78_RS13365QZL78_RS13370
Partner locus tags
QZL78_RS13365QZL78_RS13370
Partner old locus tags
SAMEA3545288_02666SAMEA3545288_02667
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021975785.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS13370Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_02667Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000018.1Sequence record reported by the local genomic context database.
Genomic interval13 978-14 667 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 828-14 667 ntGCF_900066335::NZ_FMEU01000018.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000018.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000018.1All displayed genes belong to this local TCS context.
Neighborhood span12 828-14 667 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 828 nt14 667 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QZL78_RS13365GCF_900066335#QZL78_RS13365
HKClassic
12 828-13 985 nt · Forward (+)
QZL78_RS13370GCF_900066335#QZL78_RS13370
RROmpRCurrent focus
13 978-14 667 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013317245#G5B12_RS10565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1268155
Simplified PFAM architecture for RROC_1268155
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1268155
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_013317245#G5B12_RS10565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key