1 Response_reg#1
263-366 aa · 104 aa · 12.9% of protein
Raw token
Response_reg:263:2.76e-26:366:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS13175
Response regulator, PleD_VieA family
uncultured Blautia sp. · GCF_900066335
ClassRRTypePleD_VieALength804 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900066335#QZL78_RS13175Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length804 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage444 / 804 aa (55.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa804 aa
Domain-by-domain annotation3 items
2 GGDEF#2
392-496 aa · 105 aa · 13.1% of protein
Raw token
GGDEF:392:2.65e-19:496:109:1603 EAL#3
557-791 aa · 235 aa · 29.2% of protein
Raw token
EAL:557:9.15e-66:791:237:235- Raw architecture: Response_reg:263:2.76e-26:366:105:111#GGDEF:392:2.65e-19:496:109:160#EAL:557:9.15e-66:791:237:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900066335::NZ_FMEU01000017.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27402-29816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_02627RefSeq proteinWP_294420195.1
Context group ID
GCF_900066335::NZ_FMEU01000017.1::G00043Context members
QZL78_RS13175
Partner locus tags
QZL78_RS13175
Partner old locus tags
SAMEA3545288_02627
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294420195.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS13175Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_02627Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000017.1Sequence record reported by the local genomic context database.
Genomic interval27 402-29 816 nt2 415 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 402-29 816 ntGCF_900066335::NZ_FMEU01000017.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000017.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000017.1All displayed genes belong to this local TCS context.
Neighborhood span27 402-29 816 nt2 415 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 402 nt29 816 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZL78_RS13175GCF_900066335#QZL78_RS13175
RRPleD_VieACurrent focus
27 402-29 816 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900066335#QZL78_RS13175The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0015886
Simplified PFAM architecture for RROC_0015886
PFAM domain coverage: 447 / 804 aa (55.6%)
1 aa804 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[263-368] | GGDEF[392-498] | EAL[558-791]
- Domain count: 3
- Matched identifier: RROC_0015886
- Positioned domains: Response_reg 263-368 ; GGDEF 392-498 ; EAL 558-791
Cluster members and taxonomy
Representative gene: GCF_900066335#QZL78_RS13175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key