1 SBP_bac_3#1
43-259 aa · 217 aa · 20.0% of protein
Raw token
SBP_bac_3:43:6.43e-31:259:229:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS12680
Histidine kinase, Hybrid
uncultured Blautia sp. · GCF_900066335
ClassHKTypeHybridLength1086 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900066335#QZL78_RS12680Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length1086 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage836 / 1086 aa (77.0%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1086 aa
Domain-by-domain annotation6 items
2 SBP_bac_3#2
283-485 aa · 203 aa · 18.7% of protein
Raw token
SBP_bac_3:283:1.36e-18:485:216:2243 HisKA#3
577-643 aa · 67 aa · 6.2% of protein
Raw token
HisKA:577:4.61e-20:643:67:644 HATPase_c#4
690-804 aa · 115 aa · 10.6% of protein
Raw token
HATPase_c:690:3.1e-30:804:115:1095 Response_reg#5
826-941 aa · 116 aa · 10.7% of protein
Raw token
Response_reg:826:5.27e-18:941:116:1116 Response_reg#6
963-1080 aa · 118 aa · 10.9% of protein
Raw token
Response_reg:963:1.15e-34:1080:118:111- Raw architecture: SBP_bac_3:43:6.43e-31:259:229:224#SBP_bac_3:283:1.36e-18:485:216:224#HisKA:577:4.61e-20:643:67:64#HATPase_c:690:3.1e-30:804:115:109#Response_reg:826:5.27e-18:941:116:111#Response_reg:963:1.15e-34:1080:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900066335::NZ_FMEU01000015.1::G00042
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span67807-71067Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_02527RefSeq proteinWP_294420114.1
Context group ID
GCF_900066335::NZ_FMEU01000015.1::G00042Context members
QZL78_RS12680
Partner locus tags
QZL78_RS12680
Partner old locus tags
SAMEA3545288_02527
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294420114.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS12680Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_02527Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000015.1Sequence record reported by the local genomic context database.
Genomic interval67 807-71 067 nt3 261 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 807-71 067 ntGCF_900066335::NZ_FMEU01000015.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000015.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000015.1All displayed genes belong to this local TCS context.
Neighborhood span67 807-71 067 nt3 261 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 807 nt71 067 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZL78_RS12680GCF_900066335#QZL78_RS12680
HKHybridCurrent focus
67 807-71 067 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900066335#QZL78_RS12680The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg + Response_reg6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0236797
Simplified PFAM architecture for HKOC_0236797
PFAM domain coverage: 832 / 1086 aa (76.6%)
1 aa1086 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: SBP_bac_3[47-259] | SBP_bac_3[283-486] | HisKA[577-643] | HATPase_c[691-805] | Response_reg[826-941] | Response_reg[963-1079]
- Domain count: 6
- Matched identifier: HKOC_0236797
- Positioned domains: SBP_bac_3 47-259 ; SBP_bac_3 283-486 ; HisKA 577-643 ; HATPase_c 691-805 ; Response_reg 826-941 ; Response_reg 963-1079
Cluster members and taxonomy
Representative gene: GCF_900066335#QZL78_RS12680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key