1 HAMP#1
188-254 aa · 67 aa · 13.3% of protein
Raw token
HAMP:188:0.000000000000166:254:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS10010
Histidine kinase, Classic
uncultured Blautia sp. · GCF_900066335
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900066335#QZL78_RS10010Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 502 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 His_kinase#2
285-364 aa · 80 aa · 15.9% of protein
Raw token
His_kinase:285:6.37e-32:364:80:803 HATPase_c#3
383-492 aa · 110 aa · 21.9% of protein
Raw token
HATPase_c:383:2.35e-16:492:110:109- Raw architecture: HAMP:188:0.000000000000166:254:67:69#His_kinase:285:6.37e-32:364:80:80#HATPase_c:383:2.35e-16:492:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900066335::NZ_FMEU01000010.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40747-43831Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_01997RefSeq proteinWP_294419342.1
Context group ID
GCF_900066335::NZ_FMEU01000010.1::G00006Context members
QZL78_RS10005QZL78_RS10010
Partner locus tags
QZL78_RS10005QZL78_RS10010
Partner old locus tags
SAMEA3545288_01996SAMEA3545288_01997
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294419342.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS10010Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_01997Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000010.1Sequence record reported by the local genomic context database.
Genomic interval42 323-43 831 nt1 509 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 747-43 831 ntGCF_900066335::NZ_FMEU01000010.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000010.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000010.1All displayed genes belong to this local TCS context.
Neighborhood span40 747-43 831 nt3 085 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 747 nt43 831 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QZL78_RS10005GCF_900066335#QZL78_RS10005
RRunclassified
40 747-42 345 nt · Reverse (-)
QZL78_RS10010GCF_900066335#QZL78_RS10010
HKClassicCurrent focus
42 323-43 831 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900066335#QZL78_RS10010The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1467767
Simplified PFAM architecture for HKOC_1467767
PFAM domain coverage: 234 / 502 aa (46.6%)
1 aa502 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[206-254] | His_kinase[285-361] | HATPase_c[384-491]
- Domain count: 3
- Matched identifier: HKOC_1467767
- Positioned domains: HAMP 206-254 ; His_kinase 285-361 ; HATPase_c 384-491
Cluster members and taxonomy
Representative gene: GCF_900066335#QZL78_RS10010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key