1 Response_reg#1
52-117 aa · 66 aa · 27.5% of protein
Raw token
Response_reg:52:0.0000000158:117:70:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS08215
Response regulator LytTR family
uncultured Blautia sp. · GCF_900066335
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900066335#QZL78_RS08215Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 240 aa (62.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-230 aa · 85 aa · 35.4% of protein
Raw token
LytTR:146:0.00000000000000874:230:91:98- Raw architecture: Response_reg:52:0.0000000158:117:70:111#LytTR:146:0.00000000000000874:230:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900066335::NZ_FMEU01000007.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span116394-117116Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_01633RefSeq proteinWP_174088036.1
Context group ID
GCF_900066335::NZ_FMEU01000007.1::G00012Context members
QZL78_RS08215
Partner locus tags
QZL78_RS08215
Partner old locus tags
SAMEA3545288_01633
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_174088036.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS08215Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_01633Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000007.1Sequence record reported by the local genomic context database.
Genomic interval116 394-117 116 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 394-117 116 ntGCF_900066335::NZ_FMEU01000007.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000007.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000007.1All displayed genes belong to this local TCS context.
Neighborhood span116 394-117 116 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 394 nt117 116 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZL78_RS08215GCF_900066335#QZL78_RS08215
RRLytTRCurrent focus
116 394-117 116 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013317245#G5B12_RS08315Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0891451
Simplified PFAM architecture for RROC_0891451
PFAM domain coverage: 89 / 240 aa (37.1%)
1 aa240 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[140-228]
- Domain count: 1
- Matched identifier: RROC_0891451
- Positioned domains: LytTR 140-228
Cluster members and taxonomy
Representative gene: GCF_013317245#G5B12_RS08315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key