1 HAMP#1
103-169 aa · 67 aa · 14.7% of protein
Raw token
HAMP:103:0.000000000146:169:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS04875
Histidine kinase, Classic
uncultured Blautia sp. · GCF_900066335
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900066335#QZL78_RS04875Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage214 / 456 aa (46.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
182-249 aa · 68 aa · 14.9% of protein
Raw token
HisKA:182:0.00000000000000191:249:68:643 HATPase_c#3
295-373 aa · 79 aa · 17.3% of protein
Raw token
HATPase_c:295:2.87e-17:373:79:109- Raw architecture: HAMP:103:0.000000000146:169:67:69#HisKA:182:0.00000000000000191:249:68:64#HATPase_c:295:2.87e-17:373:79:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900066335::NZ_FMEU01000004.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span64161-65531Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_00963RefSeq proteinWP_294418049.1
Context group ID
GCF_900066335::NZ_FMEU01000004.1::G00014Context members
QZL78_RS04875
Partner locus tags
QZL78_RS04875
Partner old locus tags
SAMEA3545288_00963
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294418049.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS04875Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_00963Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000004.1Sequence record reported by the local genomic context database.
Genomic interval64 161-65 531 nt1 371 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span64 161-65 531 ntGCF_900066335::NZ_FMEU01000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000004.1All displayed genes belong to this local TCS context.
Neighborhood span64 161-65 531 nt1 371 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 161 nt65 531 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZL78_RS04875GCF_900066335#QZL78_RS04875
HKClassicCurrent focus
64 161-65 531 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900066335#QZL78_RS04875The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1898643
Simplified PFAM architecture for HKOC_1898643
PFAM domain coverage: 193 / 456 aa (42.3%)
1 aa456 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[123-169] | HisKA[182-249] | HATPase_c[296-373]
- Domain count: 3
- Matched identifier: HKOC_1898643
- Positioned domains: HAMP 123-169 ; HisKA 182-249 ; HATPase_c 296-373
Cluster members and taxonomy
Representative gene: GCF_900066335#QZL78_RS04875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key