1 Response_reg#1
4-116 aa · 113 aa · 54.3% of protein
Raw token
Response_reg:4:0.00000000000146:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS04660
Response regulator NarL family
uncultured Blautia sp. · GCF_900066335
ClassRRTypeNarLLength208 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900066335#QZL78_RS04660Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 208 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
144-197 aa · 54 aa · 26.0% of protein
Raw token
HTH_LUXR:144:0.000000224:197:54:58- Raw architecture: Response_reg:4:0.00000000000146:116:113:111#HTH_LUXR:144:0.000000224:197:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900066335::NZ_FMEU01000004.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span23891-24517Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_00923RefSeq proteinWP_294418043.1
Context group ID
GCF_900066335::NZ_FMEU01000004.1::G00013Context members
QZL78_RS04660
Partner locus tags
QZL78_RS04660
Partner old locus tags
SAMEA3545288_00923
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294418043.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS04660Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_00923Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000004.1Sequence record reported by the local genomic context database.
Genomic interval23 891-24 517 nt627 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 891-24 517 ntGCF_900066335::NZ_FMEU01000004.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000004.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000004.1All displayed genes belong to this local TCS context.
Neighborhood span23 891-24 517 nt627 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 891 nt24 517 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZL78_RS04660GCF_900066335#QZL78_RS04660
RRNarLCurrent focus
23 891-24 517 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900066335#QZL78_RS04660The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_2070034
Simplified PFAM architecture for RROC_2070034
PFAM domain coverage: 145 / 208 aa (69.7%)
1 aa208 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[4-116] | Sigma70_r4_2[144-175]
- Domain count: 2
- Matched identifier: RROC_2070034
- Positioned domains: Response_reg 4-116 ; Sigma70_r4_2 144-175
Cluster members and taxonomy
Representative gene: GCF_900066335#QZL78_RS04660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key