1 sCache_like#1
43-127 aa · 85 aa · 18.8% of protein
Raw token
sCache_like:43:0.000000206:127:92:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS03770
Histidine kinase, Classic
uncultured Blautia sp. · GCF_900066335
ClassHKTypeClassicLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900066335#QZL78_RS03770Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage260 / 451 aa (57.6%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-290 aa · 65 aa · 14.4% of protein
Raw token
HisKA:226:1.95e-16:290:65:643 HATPase_c#3
335-444 aa · 110 aa · 24.4% of protein
Raw token
HATPase_c:335:1.49e-26:444:110:109- Raw architecture: sCache_like:43:0.000000206:127:92:114#HisKA:226:1.95e-16:290:65:64#HATPase_c:335:1.49e-26:444:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900066335::NZ_FMEU01000003.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52174-54200Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_00743RefSeq proteinWP_294418004.1
Context group ID
GCF_900066335::NZ_FMEU01000003.1::G00038Context members
QZL78_RS03770QZL78_RS03775
Partner locus tags
QZL78_RS03770QZL78_RS03775
Partner old locus tags
SAMEA3545288_00743SAMEA3545288_00744
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294418004.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS03770Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_00743Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000003.1Sequence record reported by the local genomic context database.
Genomic interval52 174-53 529 nt1 356 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 174-54 200 ntGCF_900066335::NZ_FMEU01000003.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000003.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000003.1All displayed genes belong to this local TCS context.
Neighborhood span52 174-54 200 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 174 nt54 200 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QZL78_RS03770GCF_900066335#QZL78_RS03770
HKClassicCurrent focus
52 174-53 529 nt · Reverse (-)
QZL78_RS03775GCF_900066335#QZL78_RS03775
RROmpR
53 526-54 200 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900066335#QZL78_RS03770The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1961189
Simplified PFAM architecture for HKOC_1961189
PFAM domain coverage: 236 / 451 aa (52.3%)
1 aa451 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[68-131] | HisKA[226-290] | HATPase_c[338-444]
- Domain count: 3
- Matched identifier: HKOC_1961189
- Positioned domains: sCache_like 68-131 ; HisKA 226-290 ; HATPase_c 338-444
Cluster members and taxonomy
Representative gene: GCF_900066335#QZL78_RS03770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key