1 Response_reg#1
4-117 aa · 114 aa · 21.2% of protein
Raw token
Response_reg:4:3.49e-25:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS03680
Response regulator, unclassified
uncultured Blautia sp. · GCF_900066335
ClassRRTypeunclassifiedLength538 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900066335#QZL78_RS03680Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length538 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 538 aa (29.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa538 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
442-483 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:442:0.00000805:483:42:42- Raw architecture: Response_reg:4:3.49e-25:117:114:111#HTH_AraC:442:0.00000805:483:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900066335::NZ_FMEU01000003.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31426-34826Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_00726RefSeq proteinWP_021977846.1
Context group ID
GCF_900066335::NZ_FMEU01000003.1::G00037Context members
QZL78_RS03675QZL78_RS03680
Partner locus tags
QZL78_RS03675QZL78_RS03680
Partner old locus tags
SAMEA3545288_00725SAMEA3545288_00726
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021977846.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS03680Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_00726Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000003.1Sequence record reported by the local genomic context database.
Genomic interval33 210-34 826 nt1 617 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 426-34 826 ntGCF_900066335::NZ_FMEU01000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000003.1All displayed genes belong to this local TCS context.
Neighborhood span31 426-34 826 nt3 401 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 426 nt34 826 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QZL78_RS03675GCF_900066335#QZL78_RS03675
HKClassic
31 426-33 213 nt · Reverse (-)
QZL78_RS03680GCF_900066335#QZL78_RS03680
RRunclassifiedCurrent focus
33 210-34 826 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003488505#DCZ78_RS02295Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0094574
Simplified PFAM architecture for RROC_0094574
PFAM domain coverage: 191 / 538 aa (35.5%)
1 aa538 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[457-534]
- Domain count: 2
- Matched identifier: RROC_0094574
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 457-534 ; HTH_18 457-534
Cluster members and taxonomy
Representative gene: GCF_003488505#DCZ78_RS02295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key