1 HAMP#1
83-150 aa · 68 aa · 18.0% of protein
Raw token
HAMP:83:0.0000000262:150:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS01960
Histidine kinase, Classic
uncultured Blautia sp. · GCF_900066335
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900066335#QZL78_RS01960Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 378 aa (61.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation3 items
2 HisKA#2
162-222 aa · 61 aa · 16.1% of protein
Raw token
HisKA:162:0.0000000000188:222:61:643 HATPase_c#3
275-377 aa · 103 aa · 27.2% of protein
Raw token
HATPase_c:275:6.05e-26:377:106:109- Raw architecture: HAMP:83:0.0000000262:150:68:69#HisKA:162:0.0000000000188:222:61:64#HATPase_c:275:6.05e-26:377:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900066335::NZ_FMEU01000001.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span412680-414763Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_00379RefSeq proteinWP_294417513.1
Context group ID
GCF_900066335::NZ_FMEU01000001.1::G00031Context members
QZL78_RS01960QZL78_RS01965
Partner locus tags
QZL78_RS01960QZL78_RS01965
Partner old locus tags
SAMEA3545288_00379SAMEA3545288_00380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294417513.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS01960Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_00379Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000001.1Sequence record reported by the local genomic context database.
Genomic interval412 680-413 816 nt1 137 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span412 680-414 763 ntGCF_900066335::NZ_FMEU01000001.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000001.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span412 680-414 763 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
412 680 nt414 763 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QZL78_RS01960GCF_900066335#QZL78_RS01960
HKClassicCurrent focus
412 680-413 816 nt · Reverse (-)
QZL78_RS01965GCF_900066335#QZL78_RS01965
RROmpR
414 098-414 763 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900066335#QZL78_RS01960The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2633626
Simplified PFAM architecture for HKOC_2633626
PFAM domain coverage: 163 / 378 aa (43.1%)
1 aa378 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[162-221] | HATPase_c[275-377]
- Domain count: 2
- Matched identifier: HKOC_2633626
- Positioned domains: HisKA 162-221 ; HATPase_c 275-377
Cluster members and taxonomy
Representative gene: GCF_900066335#QZL78_RS01960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key