1 Response_reg#1
6-113 aa · 108 aa · 48.2% of protein
Raw token
Response_reg:6:4.58e-36:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACIRUQ_RS15070
Response regulator OmpR family
Eubacterium ramulus · GCF_045002895
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_045002895#ACIRUQ_RS15070Stable P2CS identifier used across views.
GenomeGCF_045002895Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:147:2.17e-27:222:77:77- Raw architecture: Response_reg:6:4.58e-36:113:110:111#Trans_reg_C:147:2.17e-27:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_045002895::NZ_CP173382.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3263135-3264930Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACIRUQ_15065RefSeq proteinWP_055290344.1
Context group ID
GCF_045002895::NZ_CP173382.1::G00040Context members
ACIRUQ_RS15070ACIRUQ_RS15075
Partner locus tags
ACIRUQ_RS15070ACIRUQ_RS15075
Partner old locus tags
ACIRUQ_15065ACIRUQ_15070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055290344.1Primary protein accession used for annex mappings.
UniProt accessionA0A173TZ06Primary UniProt accession resolved in the annex database.
UniProt IDA0A173TZ06_EUBRADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACIRUQ_RS15070Primary locus identifier stored in the genes table.
Old locus tagACIRUQ_15065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP173382.1Sequence record reported by the local genomic context database.
Genomic interval3 263 135-3 263 809 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 263 135-3 264 930 ntGCF_045002895::NZ_CP173382.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_045002895::NZ_CP173382.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP173382.1All displayed genes belong to this local TCS context.
Neighborhood span3 263 135-3 264 930 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 263 135 nt3 264 930 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACIRUQ_RS15070GCF_045002895#ACIRUQ_RS15070
RROmpRCurrent focus
3 263 135-3 263 809 nt · Forward (+)
ACIRUQ_RS15075GCF_045002895#ACIRUQ_RS15075
HKClassic
3 263 797-3 264 930 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS08710Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1535618
Simplified PFAM architecture for RROC_1535618
PFAM domain coverage: 182 / 224 aa (81.3%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-112] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1535618
- Positioned domains: Response_reg 6-112 ; Response_reg 6-112 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS08710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_045002895
AssemblyASM4500289v1 · Complete Genomereference genome · haploid
Genome composition3 378 009 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 71 · HK 36 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key