1 HisKA#1
146-209 aa · 64 aa · 17.1% of protein
Raw token
HisKA:146:0.000000000000829:209:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACIRUQ_RS01610
Histidine kinase, Classic
Eubacterium ramulus · GCF_045002895
ClassHKTypeClassicLength375 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_045002895#ACIRUQ_RS01610Stable P2CS identifier used across views.
GenomeGCF_045002895Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length375 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 375 aa (46.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa375 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
259-368 aa · 110 aa · 29.3% of protein
Raw token
HATPase_c:259:1.37e-26:368:111:109- Raw architecture: HisKA:146:0.000000000000829:209:64:64#HATPase_c:259:1.37e-26:368:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_045002895::NZ_CP173382.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span329125-331054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACIRUQ_01610RefSeq proteinWP_070103974.1
Context group ID
GCF_045002895::NZ_CP173382.1::G00005Context members
ACIRUQ_RS01605ACIRUQ_RS01610
Partner locus tags
ACIRUQ_RS01605ACIRUQ_RS01610
Partner old locus tags
ACIRUQ_01605ACIRUQ_01610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070103974.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACIRUQ_RS01610Primary locus identifier stored in the genes table.
Old locus tagACIRUQ_01610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP173382.1Sequence record reported by the local genomic context database.
Genomic interval329 927-331 054 nt1 128 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span329 125-331 054 ntGCF_045002895::NZ_CP173382.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_045002895::NZ_CP173382.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP173382.1All displayed genes belong to this local TCS context.
Neighborhood span329 125-331 054 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
329 125 nt331 054 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACIRUQ_RS01605GCF_045002895#ACIRUQ_RS01605
RROmpR
329 125-329 832 nt · Forward (+)
ACIRUQ_RS01610GCF_045002895#ACIRUQ_RS01610
HKClassicCurrent focus
329 927-331 054 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_045002895#ACIRUQ_RS01610The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2656855
Simplified PFAM architecture for HKOC_2656855
PFAM domain coverage: 173 / 375 aa (46.1%)
1 aa375 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[147-209] | HATPase_c[259-368]
- Domain count: 2
- Matched identifier: HKOC_2656855
- Positioned domains: HisKA 147-209 ; HATPase_c 259-368
Cluster members and taxonomy
Representative gene: GCF_045002895#ACIRUQ_RS01610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_045002895
AssemblyASM4500289v1 · Complete Genomereference genome · haploid
Genome composition3 378 009 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 71 · HK 36 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key