1 Response_reg#1
5-118 aa · 114 aa · 38.3% of protein
Raw token
Response_reg:5:1.72e-21:118:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACIRUQ_RS12940
Response regulator, unclassified
Eubacterium ramulus · GCF_045002895
ClassRRTypeunclassifiedLength298 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_045002895#ACIRUQ_RS12940Stable P2CS identifier used across views.
GenomeGCF_045002895Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 298 aa (38.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.72e-21:118:116:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_045002895::NZ_CP173382.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2772302-2775170Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACIRUQ_12935RefSeq proteinWP_055291231.1
Context group ID
GCF_045002895::NZ_CP173382.1::G00031Context members
ACIRUQ_RS12935ACIRUQ_RS12940
Partner locus tags
ACIRUQ_RS12935ACIRUQ_RS12940
Partner old locus tags
ACIRUQ_12930ACIRUQ_12935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055291231.1Primary protein accession used for annex mappings.
UniProt accessionA0A173VGS8Primary UniProt accession resolved in the annex database.
UniProt IDA0A173VGS8_EUBRADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACIRUQ_RS12940Primary locus identifier stored in the genes table.
Old locus tagACIRUQ_12935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP173382.1Sequence record reported by the local genomic context database.
Genomic interval2 774 274-2 775 170 nt897 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 772 302-2 775 170 ntGCF_045002895::NZ_CP173382.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_045002895::NZ_CP173382.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP173382.1All displayed genes belong to this local TCS context.
Neighborhood span2 772 302-2 775 170 nt2 869 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 772 302 nt2 775 170 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACIRUQ_RS12935GCF_045002895#ACIRUQ_RS12935
HKClassic
2 772 302-2 774 164 nt · Forward (+)
ACIRUQ_RS12940GCF_045002895#ACIRUQ_RS12940
RRunclassifiedCurrent focus
2 774 274-2 775 170 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS14365Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0576851
Simplified PFAM architecture for RROC_0576851
PFAM domain coverage: 113 / 298 aa (37.9%)
1 aa298 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-117]
- Domain count: 1
- Matched identifier: RROC_0576851
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS14365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_045002895
AssemblyASM4500289v1 · Complete Genomereference genome · haploid
Genome composition3 378 009 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 71 · HK 36 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key