1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.39e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACIRUQ_RS06135
Response regulator OmpR family
Eubacterium ramulus · GCF_045002895
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_045002895#ACIRUQ_RS06135Stable P2CS identifier used across views.
GenomeGCF_045002895Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 232 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-224 aa · 75 aa · 32.3% of protein
Raw token
Trans_reg_C:150:1.09e-34:224:75:77- Raw architecture: Response_reg:5:1.39e-40:114:111:111#Trans_reg_C:150:1.09e-34:224:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_045002895::NZ_CP173382.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1299439-1301564Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACIRUQ_06135RefSeq proteinWP_021738701.1
Context group ID
GCF_045002895::NZ_CP173382.1::G00017Context members
ACIRUQ_RS06130ACIRUQ_RS06135
Partner locus tags
ACIRUQ_RS06130ACIRUQ_RS06135
Partner old locus tags
ACIRUQ_06130ACIRUQ_06135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021738701.1Primary protein accession used for annex mappings.
UniProt accessionU2RA49Primary UniProt accession resolved in the annex database.
UniProt IDU2RA49_EUBRADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACIRUQ_RS06135Primary locus identifier stored in the genes table.
Old locus tagACIRUQ_06135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP173382.1Sequence record reported by the local genomic context database.
Genomic interval1 300 866-1 301 564 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 299 439-1 301 564 ntGCF_045002895::NZ_CP173382.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_045002895::NZ_CP173382.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP173382.1All displayed genes belong to this local TCS context.
Neighborhood span1 299 439-1 301 564 nt2 126 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 299 439 nt1 301 564 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACIRUQ_RS06130GCF_045002895#ACIRUQ_RS06130
HKClassic
1 299 439-1 300 866 nt · Reverse (-)
ACIRUQ_RS06135GCF_045002895#ACIRUQ_RS06135
RROmpRCurrent focus
1 300 866-1 301 564 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS05750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1121750
Simplified PFAM architecture for RROC_1121750
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1121750
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS05750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_045002895
AssemblyASM4500289v1 · Complete Genomereference genome · haploid
Genome composition3 378 009 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 71 · HK 36 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key