1 Response_reg#1
7-110 aa · 104 aa · 30.0% of protein
Raw token
Response_reg:7:6.34e-26:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACIRUQ_RS01885
Response regulator RpfG family
Eubacterium ramulus · GCF_045002895
ClassRRTypeRpfGLength347 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_045002895#ACIRUQ_RS01885Stable P2CS identifier used across views.
GenomeGCF_045002895Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 347 aa (60.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation2 items
2 HD#2
193-299 aa · 107 aa · 30.8% of protein
Raw token
HD:193:0.000000000000436:299:107:110- Raw architecture: Response_reg:7:6.34e-26:110:105:111#HD:193:0.000000000000436:299:107:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_045002895::NZ_CP173382.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span403956-404999Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACIRUQ_01885RefSeq proteinWP_404856522.1
Context group ID
GCF_045002895::NZ_CP173382.1::G00006Context members
ACIRUQ_RS01885
Partner locus tags
ACIRUQ_RS01885
Partner old locus tags
ACIRUQ_01885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404856522.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACIRUQ_RS01885Primary locus identifier stored in the genes table.
Old locus tagACIRUQ_01885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP173382.1Sequence record reported by the local genomic context database.
Genomic interval403 956-404 999 nt1 044 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span403 956-404 999 ntGCF_045002895::NZ_CP173382.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_045002895::NZ_CP173382.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP173382.1All displayed genes belong to this local TCS context.
Neighborhood span403 956-404 999 nt1 044 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
403 956 nt404 999 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACIRUQ_RS01885GCF_045002895#ACIRUQ_RS01885
RRRpfGCurrent focus
403 956-404 999 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS05410Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0482599
Simplified PFAM architecture for RROC_0482599
PFAM domain coverage: 250 / 349 aa (71.6%)
1 aa349 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[9-119] | HD_5[184-322]
- Domain count: 2
- Matched identifier: RROC_0482599
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; HD_5 184-322 ; HD_5 184-322
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS05410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_045002895
AssemblyASM4500289v1 · Complete Genomereference genome · haploid
Genome composition3 378 009 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 71 · HK 36 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key