1 Response_reg#1
4-116 aa · 113 aa · 22.2% of protein
Raw token
Response_reg:4:5.24e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACIRUQ_RS00895
Response regulator, unclassified
Eubacterium ramulus · GCF_045002895
ClassRRTypeunclassifiedLength510 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_045002895#ACIRUQ_RS00895Stable P2CS identifier used across views.
GenomeGCF_045002895Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 510 aa (37.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-447 aa · 40 aa · 7.8% of protein
Raw token
HTH_AraC:408:0.0000000388:447:40:423 HTH_AraC#3
460-497 aa · 38 aa · 7.5% of protein
Raw token
HTH_AraC:460:0.000000143:497:38:42- Raw architecture: Response_reg:4:5.24e-29:116:113:111#HTH_AraC:408:0.0000000388:447:40:42#HTH_AraC:460:0.000000143:497:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_045002895::NZ_CP173382.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span160462-163660Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACIRUQ_00895RefSeq proteinWP_055290400.1
Context group ID
GCF_045002895::NZ_CP173382.1::G00004Context members
ACIRUQ_RS00895ACIRUQ_RS00900
Partner locus tags
ACIRUQ_RS00895ACIRUQ_RS00900
Partner old locus tags
ACIRUQ_00895ACIRUQ_00900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055290400.1Primary protein accession used for annex mappings.
UniProt accessionA0A173U6W5Primary UniProt accession resolved in the annex database.
UniProt IDA0A173U6W5_EUBRADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACIRUQ_RS00895Primary locus identifier stored in the genes table.
Old locus tagACIRUQ_00895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP173382.1Sequence record reported by the local genomic context database.
Genomic interval160 462-161 994 nt1 533 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span160 462-163 660 ntGCF_045002895::NZ_CP173382.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_045002895::NZ_CP173382.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP173382.1All displayed genes belong to this local TCS context.
Neighborhood span160 462-163 660 nt3 199 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 462 nt163 660 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACIRUQ_RS00895GCF_045002895#ACIRUQ_RS00895
RRunclassifiedCurrent focus
160 462-161 994 nt · Forward (+)
ACIRUQ_RS00900GCF_045002895#ACIRUQ_RS00900
HKClassic
161 966-163 660 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS09325Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0146324
Simplified PFAM architecture for RROC_0146324
PFAM domain coverage: 190 / 510 aa (37.3%)
1 aa510 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[420-497]
- Domain count: 2
- Matched identifier: RROC_0146324
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 420-497 ; HTH_18 420-497
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS09325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_045002895
AssemblyASM4500289v1 · Complete Genomereference genome · haploid
Genome composition3 378 009 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 71 · HK 36 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key