1 HisKA#1
645-710 aa · 66 aa · 7.6% of protein
Raw token
HisKA:645:8.04e-16:710:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHUL_RS00345
Histidine kinase, Classic
Dorea longicatena · GCF_042854315
ClassHKTypeClassicLength864 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042854315#ACGHUL_RS00345Stable P2CS identifier used across views.
GenomeGCF_042854315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length864 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 864 aa (20.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa864 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
756-863 aa · 108 aa · 12.5% of protein
Raw token
HATPase_c:756:0.00000000000847:863:113:109- Raw architecture: HisKA:645:8.04e-16:710:66:64#HATPase_c:756:0.00000000000847:863:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042854315::NZ_AP031429.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70159-73461Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI260019D6_00570RefSeq proteinWP_390606025.1
Context group ID
GCF_042854315::NZ_AP031429.1::G00001Context members
ACGHUL_RS00340ACGHUL_RS00345
Partner locus tags
ACGHUL_RS00340ACGHUL_RS00345
Partner old locus tags
I260019D6_00560I260019D6_00570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390606025.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHUL_RS00345Primary locus identifier stored in the genes table.
Old locus tagI260019D6_00570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031429.1Sequence record reported by the local genomic context database.
Genomic interval70 867-73 461 nt2 595 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 159-73 461 ntGCF_042854315::NZ_AP031429.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042854315::NZ_AP031429.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031429.1All displayed genes belong to this local TCS context.
Neighborhood span70 159-73 461 nt3 303 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 159 nt73 461 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHUL_RS00340GCF_042854315#ACGHUL_RS00340
RROmpR
70 159-70 854 nt · Forward (+)
ACGHUL_RS00345GCF_042854315#ACGHUL_RS00345
HKClassicCurrent focus
70 867-73 461 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042854315#ACGHUL_RS00345The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0467093
Simplified PFAM architecture for HKOC_0467093
PFAM domain coverage: 170 / 864 aa (19.7%)
1 aa864 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[645-710] | HATPase_c[757-860]
- Domain count: 2
- Matched identifier: HKOC_0467093
- Positioned domains: HisKA 645-710 ; HATPase_c 757-860
Cluster members and taxonomy
Representative gene: GCF_042854315#ACGHUL_RS00345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_042854315
AssemblyASM4285431v1 · Complete Genomehaploid
Genome composition3 179 541 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 82 · HK 43 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key