1 Response_reg#1
3-119 aa · 117 aa · 48.5% of protein
Raw token
Response_reg:3:1.06e-22:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHUL_RS00845
Response regulator LytTR family
Dorea longicatena · GCF_042854315
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042854315#ACGHUL_RS00845Stable P2CS identifier used across views.
GenomeGCF_042854315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage213 / 241 aa (88.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-232 aa · 96 aa · 39.8% of protein
Raw token
LytTR:137:3e-21:232:101:98- Raw architecture: Response_reg:3:1.06e-22:119:117:111#LytTR:137:3e-21:232:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042854315::NZ_AP031429.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span180053-180778Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI260019D6_01480RefSeq proteinWP_226824573.1
Context group ID
GCF_042854315::NZ_AP031429.1::G00003Context members
ACGHUL_RS00845
Partner locus tags
ACGHUL_RS00845
Partner old locus tags
I260019D6_01480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_226824573.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1ANH1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1ANH1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHUL_RS00845Primary locus identifier stored in the genes table.
Old locus tagI260019D6_01480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031429.1Sequence record reported by the local genomic context database.
Genomic interval180 053-180 778 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span180 053-180 778 ntGCF_042854315::NZ_AP031429.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042854315::NZ_AP031429.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031429.1All displayed genes belong to this local TCS context.
Neighborhood span180 053-180 778 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
180 053 nt180 778 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGHUL_RS00845GCF_042854315#ACGHUL_RS00845
RRLytTRCurrent focus
180 053-180 778 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003324155#C4886_RS10540Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0867526
Simplified PFAM architecture for RROC_0867526
PFAM domain coverage: 200 / 241 aa (83.0%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-111] | LytTR[138-232]
- Domain count: 2
- Matched identifier: RROC_0867526
- Positioned domains: Response_reg 7-111 ; Response_reg 7-111 ; LytTR 138-232 ; LytTR 138-232
Cluster members and taxonomy
Representative gene: GCF_003324155#C4886_RS10540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_042854315
AssemblyASM4285431v1 · Complete Genomehaploid
Genome composition3 179 541 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 82 · HK 43 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key