1 PAS_3#1
39-127 aa · 89 aa · 10.3% of protein
Raw token
PAS_3:39:5.25e-21:127:89:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGG89_RS10210
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_042845895
ClassHKTypeHybridLength868 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042845895#ACGG89_RS10210Stable P2CS identifier used across views.
GenomeGCF_042845895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length868 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage505 / 868 aa (58.2%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa868 aa
Domain-by-domain annotation5 items
2 HisKA#2
358-424 aa · 67 aa · 7.7% of protein
Raw token
HisKA:358:2.71e-16:424:67:643 HATPase_c#3
471-585 aa · 115 aa · 13.2% of protein
Raw token
HATPase_c:471:1.79e-30:585:115:1094 Response_reg#4
605-721 aa · 117 aa · 13.5% of protein
Raw token
Response_reg:605:6.06e-19:721:117:1115 Response_reg#5
749-865 aa · 117 aa · 13.5% of protein
Raw token
Response_reg:749:7.37e-29:865:117:111- Raw architecture: PAS_3:39:5.25e-21:127:89:89#HisKA:358:2.71e-16:424:67:64#HATPase_c:471:1.79e-30:585:115:109#Response_reg:605:6.06e-19:721:117:111#Response_reg:749:7.37e-29:865:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042845895::NZ_BAABYN010000001.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2049715-2052321Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI2800192A2_20090RefSeq proteinWP_390136447.1
Context group ID
GCF_042845895::NZ_BAABYN010000001.1::G00022Context members
ACGG89_RS10210
Partner locus tags
ACGG89_RS10210
Partner old locus tags
I2800192A2_20090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390136447.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGG89_RS10210Primary locus identifier stored in the genes table.
Old locus tagI2800192A2_20090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAABYN010000001.1Sequence record reported by the local genomic context database.
Genomic interval2 049 715-2 052 321 nt2 607 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 049 715-2 052 321 ntGCF_042845895::NZ_BAABYN010000001.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042845895::NZ_BAABYN010000001.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAABYN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 049 715-2 052 321 nt2 607 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 049 715 nt2 052 321 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGG89_RS10210GCF_042845895#ACGG89_RS10210
HKHybridCurrent focus
2 049 715-2 052 321 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042845895#ACGG89_RS10210The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0461966
Simplified PFAM architecture for HKOC_0461966
PFAM domain coverage: 506 / 868 aa (58.3%)
1 aa868 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[38-127] | HisKA[358-424] | HATPase_c[471-587] | Response_reg[605-720] | Response_reg[749-864]
- Domain count: 5
- Matched identifier: HKOC_0461966
- Positioned domains: PAS_3 38-127 ; HisKA 358-424 ; HATPase_c 471-587 ; Response_reg 605-720 ; Response_reg 749-864
Cluster members and taxonomy
Representative gene: GCF_042845895#ACGG89_RS10210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_042845895
AssemblyASM4284589v1 · Contighaploid
Genome composition3 562 690 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 66 · HK 32 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key