1 Response_reg#1
6-113 aa · 108 aa · 47.6% of protein
Raw token
Response_reg:6:1.57e-29:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGG89_RS02755
Response regulator OmpR family
Anaerostipes hadrus · GCF_042845895
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042845895#ACGG89_RS02755Stable P2CS identifier used across views.
GenomeGCF_042845895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 227 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:146:5.96e-30:221:76:77- Raw architecture: Response_reg:6:1.57e-29:113:109:111#Trans_reg_C:146:5.96e-30:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042845895::NZ_BAABYN010000001.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span577405-578981Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI2800192A2_05410RefSeq proteinWP_147599808.1
Context group ID
GCF_042845895::NZ_BAABYN010000001.1::G00014Context members
ACGG89_RS02755ACGG89_RS02760
Partner locus tags
ACGG89_RS02755ACGG89_RS02760
Partner old locus tags
I2800192A2_05410I2800192A2_05420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147599808.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGG89_RS02755Primary locus identifier stored in the genes table.
Old locus tagI2800192A2_05410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAABYN010000001.1Sequence record reported by the local genomic context database.
Genomic interval577 405-578 088 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span577 405-578 981 ntGCF_042845895::NZ_BAABYN010000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042845895::NZ_BAABYN010000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAABYN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span577 405-578 981 nt1 577 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
577 405 nt578 981 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGG89_RS02755GCF_042845895#ACGG89_RS02755
RROmpRCurrent focus
577 405-578 088 nt · Forward (+)
ACGG89_RS02760GCF_042845895#ACGG89_RS02760
HKClassic
578 085-578 981 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784725#GPK75_RS03855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1378608
Simplified PFAM architecture for RROC_1378608
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[146-222]
- Domain count: 2
- Matched identifier: RROC_1378608
- Positioned domains: Response_reg 6-113 ; Trans_reg_C 146-222
Cluster members and taxonomy
Representative gene: GCF_018784725#GPK75_RS03855
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 5 over 5 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_042845895
AssemblyASM4284589v1 · Contighaploid
Genome composition3 562 690 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 66 · HK 32 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key