1 HAMP#1
61-130 aa · 70 aa · 19.3% of protein
Raw token
HAMP:61:0.00000000449:130:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACDE68_RS02490
Histidine kinase, Classic
[Ruminococcus] torques · GCF_041329195
ClassHKTypeClassicLength362 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041329195#ACDE68_RS02490Stable P2CS identifier used across views.
GenomeGCF_041329195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 362 aa (65.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
147-210 aa · 64 aa · 17.7% of protein
Raw token
HisKA:147:0.000000622:210:64:643 HATPase_c#3
255-358 aa · 104 aa · 28.7% of protein
Raw token
HATPase_c:255:7.25e-19:358:107:109- Raw architecture: HAMP:61:0.00000000449:130:70:69#HisKA:147:0.000000622:210:64:64#HATPase_c:255:7.25e-19:358:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041329195::NZ_JBGKOT010000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3885-5728Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041329195::NZ_JBGKOT010000002.1::G00005Context members
ACDE68_RS02490ACDE68_RS02495
Partner locus tags
ACDE68_RS02490ACDE68_RS02495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_245193899.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACDE68_RS02490Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBGKOT010000002.1Sequence record reported by the local genomic context database.
Genomic interval3 885-4 973 nt1 089 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 885-5 728 ntGCF_041329195::NZ_JBGKOT010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041329195::NZ_JBGKOT010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGKOT010000002.1All displayed genes belong to this local TCS context.
Neighborhood span3 885-5 728 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 885 nt5 728 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACDE68_RS02490GCF_041329195#ACDE68_RS02490
HKClassicCurrent focus
3 885-4 973 nt · Reverse (-)
ACDE68_RS02495GCF_041329195#ACDE68_RS02495
RROmpR
5 054-5 728 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210655#RO1_RS13510Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503354
Simplified PFAM architecture for HKOC_2503354
PFAM domain coverage: 211 / 393 aa (53.7%)
1 aa393 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[117-160] | HisKA[178-241] | HATPase_c[287-389]
- Domain count: 3
- Matched identifier: HKOC_2503354
- Positioned domains: HAMP 117-160 ; HisKA 178-241 ; HATPase_c 287-389
Cluster members and taxonomy
Representative gene: GCF_000210655#RO1_RS13510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_041329195
AssemblyASM4132919v1 · Contighaploid
Genome composition3 096 333 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 56 · HK 26 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key