1 HAMP#1
40-107 aa · 68 aa · 19.4% of protein
Raw token
HAMP:40:0.00000000000000442:107:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACDE68_RS01225
Histidine kinase, Classic
[Ruminococcus] torques · GCF_041329195
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041329195#ACDE68_RS01225Stable P2CS identifier used across views.
GenomeGCF_041329195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 351 aa (70.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
118-185 aa · 68 aa · 19.4% of protein
Raw token
HisKA:118:0.00000000000000121:185:68:643 HATPase_c#3
233-345 aa · 113 aa · 32.2% of protein
Raw token
HATPase_c:233:2.47e-32:345:113:109- Raw architecture: HAMP:40:0.00000000000000442:107:68:69#HisKA:118:0.00000000000000121:185:68:64#HATPase_c:233:2.47e-32:345:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041329195::NZ_JBGKOT010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span271841-273581Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041329195::NZ_JBGKOT010000001.1::G00003Context members
ACDE68_RS01220ACDE68_RS01225
Partner locus tags
ACDE68_RS01220ACDE68_RS01225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009242476.1Primary protein accession used for annex mappings.
UniProt accessionA0A173XK18Primary UniProt accession resolved in the annex database.
UniProt IDA0A173XK18_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACDE68_RS01225Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBGKOT010000001.1Sequence record reported by the local genomic context database.
Genomic interval272 526-273 581 nt1 056 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span271 841-273 581 ntGCF_041329195::NZ_JBGKOT010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041329195::NZ_JBGKOT010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGKOT010000001.1All displayed genes belong to this local TCS context.
Neighborhood span271 841-273 581 nt1 741 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
271 841 nt273 581 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACDE68_RS01220GCF_041329195#ACDE68_RS01220
RROmpR
271 841-272 533 nt · Reverse (-)
ACDE68_RS01225GCF_041329195#ACDE68_RS01225
HKClassicCurrent focus
272 526-273 581 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405315#AQ985_RS00665Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2793104
Simplified PFAM architecture for HKOC_2793104
PFAM domain coverage: 229 / 351 aa (65.2%)
1 aa351 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[55-106] | HisKA[119-184] | HATPase_c[233-343]
- Domain count: 3
- Matched identifier: HKOC_2793104
- Positioned domains: HAMP 55-106 ; HisKA 119-184 ; HATPase_c 233-343
Cluster members and taxonomy
Representative gene: GCF_001405315#AQ985_RS00665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_041329195
AssemblyASM4132919v1 · Contighaploid
Genome composition3 096 333 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 56 · HK 26 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key