1 HisKA#1
208-272 aa · 65 aa · 15.0% of protein
Raw token
HisKA:208:3.58e-16:272:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACDE68_RS00710
Histidine kinase, Classic
[Ruminococcus] torques · GCF_041329195
ClassHKTypeClassicLength432 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041329195#ACDE68_RS00710Stable P2CS identifier used across views.
GenomeGCF_041329195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length432 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 432 aa (37.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
319-414 aa · 96 aa · 22.2% of protein
Raw token
HATPase_c:319:0.0000000000000946:414:97:109- Raw architecture: HisKA:208:3.58e-16:272:65:64#HATPase_c:319:0.0000000000000946:414:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041329195::NZ_JBGKOT010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span150590-152582Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041329195::NZ_JBGKOT010000001.1::G00001Context members
ACDE68_RS00710ACDE68_RS00715
Partner locus tags
ACDE68_RS00710ACDE68_RS00715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009242408.1Primary protein accession used for annex mappings.
UniProt accessionR5QD43Primary UniProt accession resolved in the annex database.
UniProt IDR5QD43_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACDE68_RS00710Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBGKOT010000001.1Sequence record reported by the local genomic context database.
Genomic interval150 590-151 888 nt1 299 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span150 590-152 582 ntGCF_041329195::NZ_JBGKOT010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041329195::NZ_JBGKOT010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGKOT010000001.1All displayed genes belong to this local TCS context.
Neighborhood span150 590-152 582 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
150 590 nt152 582 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACDE68_RS00710GCF_041329195#ACDE68_RS00710
HKClassicCurrent focus
150 590-151 888 nt · Reverse (-)
ACDE68_RS00715GCF_041329195#ACDE68_RS00715
RROmpR
151 863-152 582 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS10475Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2151570
Simplified PFAM architecture for HKOC_2151570
PFAM domain coverage: 159 / 432 aa (36.8%)
1 aa432 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-272] | HATPase_c[320-414]
- Domain count: 2
- Matched identifier: HKOC_2151570
- Positioned domains: HisKA 209-272 ; HATPase_c 320-414
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS10475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_041329195
AssemblyASM4132919v1 · Contighaploid
Genome composition3 096 333 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 56 · HK 26 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key