1 Response_reg#1
40-122 aa · 83 aa · 33.2% of protein
Raw token
Response_reg:40:0.000000166:122:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAIS09_RS10555
Response regulator LytTR family
Streptococcus pneumoniae · GCF_041228315
ClassRRTypeLytTRLength250 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_041228315#AAIS09_RS10555Stable P2CS identifier used across views.
GenomeGCF_041228315Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 250 aa (70.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation2 items
2 LytTR#2
152-245 aa · 94 aa · 37.6% of protein
Raw token
LytTR:152:8.83e-21:245:97:98- Raw architecture: Response_reg:40:0.000000166:122:83:111#LytTR:152:8.83e-21:245:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_041228315::NZ_CP154595.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2070414-2071166Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAIS09_10540RefSeq proteinWP_000866065.1
Context group ID
GCF_041228315::NZ_CP154595.1::G00015Context members
AAIS09_RS10555
Partner locus tags
AAIS09_RS10555
Partner old locus tags
AAIS09_10540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000866065.1Primary protein accession used for annex mappings.
UniProt accessionC1CBL2Primary UniProt accession resolved in the annex database.
UniProt IDC1CBL2_STRP7Display identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAIS09_RS10555Primary locus identifier stored in the genes table.
Old locus tagAAIS09_10540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP154595.1Sequence record reported by the local genomic context database.
Genomic interval2 070 414-2 071 166 nt753 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 070 414-2 071 166 ntGCF_041228315::NZ_CP154595.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041228315::NZ_CP154595.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP154595.1All displayed genes belong to this local TCS context.
Neighborhood span2 070 414-2 071 166 nt753 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 070 414 nt2 071 166 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAIS09_RS10555GCF_041228315#AAIS09_RS10555
RRLytTRCurrent focus
2 070 414-2 071 166 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006885#SP_RS11425Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0721906
Simplified PFAM architecture for RROC_0721906
PFAM domain coverage: 208 / 250 aa (83.2%)
1 aa250 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-121] | LytTR[152-244]
- Domain count: 2
- Matched identifier: RROC_0721906
- Positioned domains: Response_reg 7-121 ; Response_reg 7-121 ; LytTR 152-244 ; LytTR 152-244
Cluster members and taxonomy
Representative gene: GCF_000006885#SP_RS11425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 313 · GCF_041228315
Assembly20238042 · Complete Genomehaploid
Genome composition2 075 787 bp · 40,0% GCStreptococcus pneumoniae
Signal transduction countsGenes 29 · HK 14 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key