1 HisKA_3#1
132-200 aa · 69 aa · 20.8% of protein
Raw token
HisKA_3:132:2.61e-17:200:69:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAIS09_RS01875
Histidine kinase, Classic
Streptococcus pneumoniae · GCF_041228315
ClassHKTypeClassicLength331 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041228315#AAIS09_RS01875Stable P2CS identifier used across views.
GenomeGCF_041228315Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length331 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 331 aa (48.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa331 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
238-327 aa · 90 aa · 27.2% of protein
Raw token
HATPase_c:238:0.00000000000000304:327:105:109- Raw architecture: HisKA_3:132:2.61e-17:200:69:68#HATPase_c:238:0.00000000000000304:327:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041228315::NZ_CP154595.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span360174-361815Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAIS09_01870RefSeq proteinWP_057485887.1
Context group ID
GCF_041228315::NZ_CP154595.1::G00004Context members
AAIS09_RS01875AAIS09_RS01880
Partner locus tags
AAIS09_RS01875AAIS09_RS01880
Partner old locus tags
AAIS09_01870AAIS09_01875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_057485887.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAIS09_RS01875Primary locus identifier stored in the genes table.
Old locus tagAAIS09_01870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP154595.1Sequence record reported by the local genomic context database.
Genomic interval360 174-361 169 nt996 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span360 174-361 815 ntGCF_041228315::NZ_CP154595.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041228315::NZ_CP154595.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP154595.1All displayed genes belong to this local TCS context.
Neighborhood span360 174-361 815 nt1 642 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
360 174 nt361 815 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAIS09_RS01875GCF_041228315#AAIS09_RS01875
HKClassicCurrent focus
360 174-361 169 nt · Forward (+)
AAIS09_RS01880GCF_041228315#AAIS09_RS01880
RRNarL
361 183-361 815 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001326575#AP607_RS06980Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2855284
Simplified PFAM architecture for HKOC_2855284
PFAM domain coverage: 159 / 331 aa (48.0%)
1 aa331 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[132-200] | HATPase_c[238-327]
- Domain count: 2
- Matched identifier: HKOC_2855284
- Positioned domains: HisKA_3 132-200 ; HATPase_c 238-327
Cluster members and taxonomy
Representative gene: GCF_001326575#AP607_RS06980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 313 · GCF_041228315
Assembly20238042 · Complete Genomehaploid
Genome composition2 075 787 bp · 40,0% GCStreptococcus pneumoniae
Signal transduction countsGenes 29 · HK 14 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key