1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:2.09e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAIS09_RS03625
Response regulator OmpR family
Streptococcus pneumoniae · GCF_041228315
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041228315#AAIS09_RS03625Stable P2CS identifier used across views.
GenomeGCF_041228315Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 224 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:145:1.82e-23:220:77:77- Raw architecture: Response_reg:4:2.09e-28:113:111:111#Trans_reg_C:145:1.82e-23:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041228315::NZ_CP154595.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span707115-709113Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAIS09_03615RefSeq proteinWP_000590640.1
Context group ID
GCF_041228315::NZ_CP154595.1::G00008Context members
AAIS09_RS03625AAIS09_RS03630
Partner locus tags
AAIS09_RS03625AAIS09_RS03630
Partner old locus tags
AAIS09_03615AAIS09_03620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000590640.1Primary protein accession used for annex mappings.
UniProt accessionC1C6E2Primary UniProt accession resolved in the annex database.
UniProt IDC1C6E2_STRP7Display identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAIS09_RS03625Primary locus identifier stored in the genes table.
Old locus tagAAIS09_03615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP154595.1Sequence record reported by the local genomic context database.
Genomic interval707 115-707 789 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span707 115-709 113 ntGCF_041228315::NZ_CP154595.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041228315::NZ_CP154595.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP154595.1All displayed genes belong to this local TCS context.
Neighborhood span707 115-709 113 nt1 999 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
707 115 nt709 113 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAIS09_RS03625GCF_041228315#AAIS09_RS03625
RROmpRCurrent focus
707 115-707 789 nt · Forward (+)
AAIS09_RS03630GCF_041228315#AAIS09_RS03630
HKClassic
707 779-709 113 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900021085#A2F10_RS07315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1458844
Simplified PFAM architecture for RROC_1458844
PFAM domain coverage: 184 / 226 aa (81.4%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1458844
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_900021085#A2F10_RS07315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 313 · GCF_041228315
Assembly20238042 · Complete Genomehaploid
Genome composition2 075 787 bp · 40,0% GCStreptococcus pneumoniae
Signal transduction countsGenes 29 · HK 14 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key