1 Response_reg#1
5-117 aa · 113 aa · 46.1% of protein
Raw token
Response_reg:5:3.34e-35:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAIS09_RS03010
Response regulator, unclassified
Streptococcus pneumoniae · GCF_041228315
ClassRRTypeunclassifiedLength245 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041228315#AAIS09_RS03010Stable P2CS identifier used across views.
GenomeGCF_041228315Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 245 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
149-190 aa · 42 aa · 17.1% of protein
Raw token
HTH_AraC:149:0.00000266:190:42:423 HTH_AraC#3
203-239 aa · 37 aa · 15.1% of protein
Raw token
HTH_AraC:203:0.000000112:239:37:42- Raw architecture: Response_reg:5:3.34e-35:117:113:111#HTH_AraC:149:0.00000266:190:42:42#HTH_AraC:203:0.000000112:239:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041228315::NZ_CP154595.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span593211-595636Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAIS09_03005RefSeq proteinWP_000222616.1
Context group ID
GCF_041228315::NZ_CP154595.1::G00007Context members
AAIS09_RS03010AAIS09_RS03015
Partner locus tags
AAIS09_RS03010AAIS09_RS03015
Partner old locus tags
AAIS09_03005AAIS09_03010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000222616.1Primary protein accession used for annex mappings.
UniProt accessionC1C623Primary UniProt accession resolved in the annex database.
UniProt IDC1C623_STRP7Display identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAIS09_RS03010Primary locus identifier stored in the genes table.
Old locus tagAAIS09_03005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP154595.1Sequence record reported by the local genomic context database.
Genomic interval593 211-593 948 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span593 211-595 636 ntGCF_041228315::NZ_CP154595.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041228315::NZ_CP154595.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP154595.1All displayed genes belong to this local TCS context.
Neighborhood span593 211-595 636 nt2 426 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
593 211 nt595 636 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAIS09_RS03010GCF_041228315#AAIS09_RS03010
RRunclassifiedCurrent focus
593 211-593 948 nt · Forward (+)
AAIS09_RS03015GCF_041228315#AAIS09_RS03015
HKClassic
593 945-595 636 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006885#SP_RS03245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0789275
Simplified PFAM architecture for RROC_0789275
PFAM domain coverage: 192 / 245 aa (78.4%)
1 aa245 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[163-241]
- Domain count: 2
- Matched identifier: RROC_0789275
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HTH_18 163-241 ; HTH_18 163-241
Cluster members and taxonomy
Representative gene: GCF_000006885#SP_RS03245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 313 · GCF_041228315
Assembly20238042 · Complete Genomehaploid
Genome composition2 075 787 bp · 40,0% GCStreptococcus pneumoniae
Signal transduction countsGenes 29 · HK 14 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key