1 Response_reg#1
4-117 aa · 114 aa · 31.6% of protein
Raw token
Response_reg:4:9.58e-26:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5834_RS08840
Response regulator, unclassified
Blautia wexlerae · GCF_040926785
ClassRRTypeunclassifiedLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926785#AB5834_RS08840Stable P2CS identifier used across views.
GenomeGCF_040926785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 361 aa (41.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
319-355 aa · 37 aa · 10.2% of protein
Raw token
HTH_AraC:319:0.000000833:355:37:42- Raw architecture: Response_reg:4:9.58e-26:117:114:111#HTH_AraC:319:0.000000833:355:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926785::NZ_JBCOHN010000021.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32924-35814Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926785::NZ_JBCOHN010000021.1::G00030Context members
AB5834_RS08840AB5834_RS08845
Partner locus tags
AB5834_RS08840AB5834_RS08845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195284885.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5834_RS08840Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHN010000021.1Sequence record reported by the local genomic context database.
Genomic interval32 924-34 009 nt1 086 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 924-35 814 ntGCF_040926785::NZ_JBCOHN010000021.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926785::NZ_JBCOHN010000021.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHN010000021.1All displayed genes belong to this local TCS context.
Neighborhood span32 924-35 814 nt2 891 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 924 nt35 814 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5834_RS08840GCF_040926785#AB5834_RS08840
RRunclassifiedCurrent focus
32 924-34 009 nt · Reverse (-)
AB5834_RS08845GCF_040926785#AB5834_RS08845
HKClassic
34 081-35 814 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015550985#I2C37_RS15515Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0457551
Simplified PFAM architecture for RROC_0457551
PFAM domain coverage: 192 / 361 aa (53.2%)
1 aa361 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[279-357]
- Domain count: 2
- Matched identifier: RROC_0457551
- Positioned domains: Response_reg 4-116 ; HTH_18 279-357
Cluster members and taxonomy
Representative gene: GCF_015550985#I2C37_RS15515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926785
AssemblyASM4092678v1 · Scaffoldhaploid
Genome composition4 190 582 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 121 · HK 58 · RR 61CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key