1 HAMP#1
187-259 aa · 73 aa · 15.1% of protein
Raw token
HAMP:187:0.0000106:259:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5834_RS01035
Histidine kinase, Classic
Blautia wexlerae · GCF_040926785
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926785#AB5834_RS01035Stable P2CS identifier used across views.
GenomeGCF_040926785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 483 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 His_kinase#2
275-352 aa · 78 aa · 16.1% of protein
Raw token
His_kinase:275:3.08e-29:352:78:803 HATPase_c#3
374-472 aa · 99 aa · 20.5% of protein
Raw token
HATPase_c:374:0.000000000124:472:104:109- Raw architecture: HAMP:187:0.0000106:259:73:69#His_kinase:275:3.08e-29:352:78:80#HATPase_c:374:0.000000000124:472:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926785::NZ_JBCOHN010000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37274-40375Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926785::NZ_JBCOHN010000002.1::G00005Context members
AB5834_RS01035AB5834_RS01040
Partner locus tags
AB5834_RS01035AB5834_RS01040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055053796.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DK95Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DK95_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5834_RS01035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHN010000002.1Sequence record reported by the local genomic context database.
Genomic interval37 274-38 725 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 274-40 375 ntGCF_040926785::NZ_JBCOHN010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926785::NZ_JBCOHN010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span37 274-40 375 nt3 102 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 274 nt40 375 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5834_RS01035GCF_040926785#AB5834_RS01035
HKClassicCurrent focus
37 274-38 725 nt · Reverse (-)
AB5834_RS01040GCF_040926785#AB5834_RS01040
RRunclassified
38 729-40 375 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS12190Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1594876
Simplified PFAM architecture for HKOC_1594876
PFAM domain coverage: 176 / 483 aa (36.4%)
1 aa483 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[276-352] | HATPase_c[374-472]
- Domain count: 2
- Matched identifier: HKOC_1594876
- Positioned domains: His_kinase 276-352 ; HATPase_c 374-472
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS12190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926785
AssemblyASM4092678v1 · Scaffoldhaploid
Genome composition4 190 582 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 121 · HK 58 · RR 61CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key