1 SBP_bac_3#1
39-255 aa · 217 aa · 23.4% of protein
Raw token
SBP_bac_3:39:1.1e-29:255:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5834_RS00890
Histidine kinase, Hybrid
Blautia wexlerae · GCF_040926785
ClassHKTypeHybridLength927 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040926785#AB5834_RS00890Stable P2CS identifier used across views.
GenomeGCF_040926785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length927 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage723 / 927 aa (78.0%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa927 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
277-481 aa · 205 aa · 22.1% of protein
Raw token
SBP_bac_3:277:1.66e-17:481:218:2243 HisKA#3
545-610 aa · 66 aa · 7.1% of protein
Raw token
HisKA:545:5.71e-18:610:66:644 HATPase_c#4
657-774 aa · 118 aa · 12.7% of protein
Raw token
HATPase_c:657:2.38e-27:774:118:1095 Response_reg#5
801-917 aa · 117 aa · 12.6% of protein
Raw token
Response_reg:801:4.78e-31:917:117:111- Raw architecture: SBP_bac_3:39:1.1e-29:255:230:224#SBP_bac_3:277:1.66e-17:481:218:224#HisKA:545:5.71e-18:610:66:64#HATPase_c:657:2.38e-27:774:118:109#Response_reg:801:4.78e-31:917:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040926785::NZ_JBCOHN010000002.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1077-3860Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926785::NZ_JBCOHN010000002.1::G00004Context members
AB5834_RS00890
Partner locus tags
AB5834_RS00890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368208966.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5834_RS00890Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHN010000002.1Sequence record reported by the local genomic context database.
Genomic interval1 077-3 860 nt2 784 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 077-3 860 ntGCF_040926785::NZ_JBCOHN010000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926785::NZ_JBCOHN010000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span1 077-3 860 nt2 784 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 077 nt3 860 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5834_RS00890GCF_040926785#AB5834_RS00890
HKHybridCurrent focus
1 077-3 860 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926725#AB5805_RS16525Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0358179
Simplified PFAM architecture for HKOC_0358179
PFAM domain coverage: 505 / 927 aa (54.5%)
1 aa927 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[48-254] | HisKA[545-610] | HATPase_c[657-772] | Response_reg[801-916]
- Domain count: 4
- Matched identifier: HKOC_0358179
- Positioned domains: SBP_bac_3 48-254 ; HisKA 545-610 ; HATPase_c 657-772 ; Response_reg 801-916
Cluster members and taxonomy
Representative gene: GCF_040926725#AB5805_RS16525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926785
AssemblyASM4092678v1 · Scaffoldhaploid
Genome composition4 190 582 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 121 · HK 58 · RR 61CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key