1 Response_reg#1
3-108 aa · 106 aa · 44.5% of protein
Raw token
Response_reg:3:1.14e-20:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5834_RS07335
Response regulator LytTR family
Blautia wexlerae · GCF_040926785
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040926785#AB5834_RS07335Stable P2CS identifier used across views.
GenomeGCF_040926785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 238 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-227 aa · 92 aa · 38.7% of protein
Raw token
LytTR:136:3.05e-17:227:101:98- Raw architecture: Response_reg:3:1.14e-20:108:108:111#LytTR:136:3.05e-17:227:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040926785::NZ_JBCOHN010000015.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span66368-67084Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926785::NZ_JBCOHN010000015.1::G00023Context members
AB5834_RS07335
Partner locus tags
AB5834_RS07335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173721891.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5834_RS07335Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHN010000015.1Sequence record reported by the local genomic context database.
Genomic interval66 368-67 084 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 368-67 084 ntGCF_040926785::NZ_JBCOHN010000015.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926785::NZ_JBCOHN010000015.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHN010000015.1All displayed genes belong to this local TCS context.
Neighborhood span66 368-67 084 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 368 nt67 084 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5834_RS07335GCF_040926785#AB5834_RS07335
RRLytTRCurrent focus
66 368-67 084 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302125#G5A00_RS16950Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0944402
Simplified PFAM architecture for RROC_0944402
PFAM domain coverage: 202 / 238 aa (84.9%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-114] | LytTR[138-227]
- Domain count: 2
- Matched identifier: RROC_0944402
- Positioned domains: Response_reg 3-114 ; LytTR 138-227
Cluster members and taxonomy
Representative gene: GCF_013302125#G5A00_RS16950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926785
AssemblyASM4092678v1 · Scaffoldhaploid
Genome composition4 190 582 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 121 · HK 58 · RR 61CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key