1 HAMP#1
68-137 aa · 70 aa · 18.4% of protein
Raw token
HAMP:68:0.0000000000000132:137:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5834_RS06360
Histidine kinase, Classic
Blautia wexlerae · GCF_040926785
ClassHKTypeClassicLength380 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926785#AB5834_RS06360Stable P2CS identifier used across views.
GenomeGCF_040926785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 380 aa (66.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa380 aa
Domain-by-domain annotation3 items
2 HisKA#2
148-215 aa · 68 aa · 17.9% of protein
Raw token
HisKA:148:0.00000000000000331:215:68:643 HATPase_c#3
262-375 aa · 114 aa · 30.0% of protein
Raw token
HATPase_c:262:9.63e-32:375:114:109- Raw architecture: HAMP:68:0.0000000000000132:137:70:69#HisKA:148:0.00000000000000331:215:68:64#HATPase_c:262:9.63e-32:375:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926785::NZ_JBCOHN010000013.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13161-14989Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926785::NZ_JBCOHN010000013.1::G00020Context members
AB5834_RS06355AB5834_RS06360
Partner locus tags
AB5834_RS06355AB5834_RS06360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020993339.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DAG1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DAG1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5834_RS06360Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHN010000013.1Sequence record reported by the local genomic context database.
Genomic interval13 847-14 989 nt1 143 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 161-14 989 ntGCF_040926785::NZ_JBCOHN010000013.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926785::NZ_JBCOHN010000013.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHN010000013.1All displayed genes belong to this local TCS context.
Neighborhood span13 161-14 989 nt1 829 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 161 nt14 989 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5834_RS06355GCF_040926785#AB5834_RS06355
RROmpR
13 161-13 850 nt · Reverse (-)
AB5834_RS06360GCF_040926785#AB5834_RS06360
HKClassicCurrent focus
13 847-14 989 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0107880Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2610619
Simplified PFAM architecture for HKOC_2610619
PFAM domain coverage: 230 / 380 aa (60.5%)
1 aa380 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[85-137] | HisKA[149-214] | HATPase_c[263-373]
- Domain count: 3
- Matched identifier: HKOC_2610619
- Positioned domains: HAMP 85-137 ; HisKA 149-214 ; HATPase_c 263-373
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0107880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926785
AssemblyASM4092678v1 · Scaffoldhaploid
Genome composition4 190 582 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 121 · HK 58 · RR 61CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key