1 HAMP#1
299-368 aa · 70 aa · 11.8% of protein
Raw token
HAMP:299:0.0000000000004:368:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5834_RS05690
Histidine kinase, Classic
Blautia wexlerae · GCF_040926785
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926785#AB5834_RS05690Stable P2CS identifier used across views.
GenomeGCF_040926785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 595 aa (42.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation3 items
2 His_kinase#2
383-461 aa · 79 aa · 13.3% of protein
Raw token
His_kinase:383:3.21e-29:461:80:803 HATPase_c#3
480-583 aa · 104 aa · 17.5% of protein
Raw token
HATPase_c:480:0.00000000000167:583:108:109- Raw architecture: HAMP:299:0.0000000000004:368:70:69#His_kinase:383:3.21e-29:461:80:80#HATPase_c:480:0.00000000000167:583:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926785::NZ_JBCOHN010000011.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16471-19090Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926785::NZ_JBCOHN010000011.1::G00017Context members
AB5834_RS05685AB5834_RS05690
Partner locus tags
AB5834_RS05685AB5834_RS05690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368208241.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5834_RS05690Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHN010000011.1Sequence record reported by the local genomic context database.
Genomic interval17 303-19 090 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 471-19 090 ntGCF_040926785::NZ_JBCOHN010000011.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926785::NZ_JBCOHN010000011.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHN010000011.1All displayed genes belong to this local TCS context.
Neighborhood span16 471-19 090 nt2 620 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 471 nt19 090 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5834_RS05685GCF_040926785#AB5834_RS05685
RRunclassified
16 471-17 301 nt · Forward (+)
AB5834_RS05690GCF_040926785#AB5834_RS05690
HKClassicCurrent focus
17 303-19 090 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926725#AB5805_RS07330Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1085946
Simplified PFAM architecture for HKOC_1085946
PFAM domain coverage: 232 / 595 aa (39.0%)
1 aa595 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[318-367] | His_kinase[383-461] | HATPase_c[481-583]
- Domain count: 3
- Matched identifier: HKOC_1085946
- Positioned domains: HAMP 318-367 ; His_kinase 383-461 ; HATPase_c 481-583
Cluster members and taxonomy
Representative gene: GCF_040926725#AB5805_RS07330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926785
AssemblyASM4092678v1 · Scaffoldhaploid
Genome composition4 190 582 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 121 · HK 58 · RR 61CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key