1 Response_reg#1
4-112 aa · 109 aa · 39.5% of protein
Raw token
Response_reg:4:2.6e-26:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5834_RS05685
Response regulator, unclassified
Blautia wexlerae · GCF_040926785
ClassRRTypeunclassifiedLength276 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926785#AB5834_RS05685Stable P2CS identifier used across views.
GenomeGCF_040926785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length276 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 276 aa (68.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa276 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
165-206 aa · 42 aa · 15.2% of protein
Raw token
HTH_AraC:165:0.0000000226:206:42:423 HTH_AraC#3
217-255 aa · 39 aa · 14.1% of protein
Raw token
HTH_AraC:217:0.00000000173:255:39:42- Raw architecture: Response_reg:4:2.6e-26:112:112:111#HTH_AraC:165:0.0000000226:206:42:42#HTH_AraC:217:0.00000000173:255:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926785::NZ_JBCOHN010000011.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16471-19090Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926785::NZ_JBCOHN010000011.1::G00017Context members
AB5834_RS05685AB5834_RS05690
Partner locus tags
AB5834_RS05685AB5834_RS05690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055152977.1Primary protein accession used for annex mappings.
UniProt accessionA0A174SBN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174SBN3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5834_RS05685Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHN010000011.1Sequence record reported by the local genomic context database.
Genomic interval16 471-17 301 nt831 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 471-19 090 ntGCF_040926785::NZ_JBCOHN010000011.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926785::NZ_JBCOHN010000011.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHN010000011.1All displayed genes belong to this local TCS context.
Neighborhood span16 471-19 090 nt2 620 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 471 nt19 090 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5834_RS05685GCF_040926785#AB5834_RS05685
RRunclassifiedCurrent focus
16 471-17 301 nt · Forward (+)
AB5834_RS05690GCF_040926785#AB5834_RS05690
HKClassic
17 303-19 090 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS16300Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0603143
Simplified PFAM architecture for RROC_0603143
PFAM domain coverage: 189 / 276 aa (68.5%)
1 aa276 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-113] | HTH_AraC[165-205] | HTH_AraC[218-255]
- Domain count: 3
- Matched identifier: RROC_0603143
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; HTH_AraC 165-205 ; HTH_AraC 165-205 ; HTH_AraC 218-255 ; HTH_AraC 218-255
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS16300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926785
AssemblyASM4092678v1 · Scaffoldhaploid
Genome composition4 190 582 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 121 · HK 58 · RR 61CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key