1 dCache_1#1
160-277 aa · 118 aa · 15.5% of protein
Raw token
dCache_1:160:0.0000379:277:118:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5834_RS01425
Histidine kinase, Hybrid
Blautia wexlerae · GCF_040926785
ClassHKTypeHybridLength759 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040926785#AB5834_RS01425Stable P2CS identifier used across views.
GenomeGCF_040926785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length759 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage421 / 759 aa (55.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa759 aa
Domain-by-domain annotation4 items
2 HisKA#2
364-430 aa · 67 aa · 8.8% of protein
Raw token
HisKA:364:2.06e-17:430:67:643 HATPase_c#3
477-595 aa · 119 aa · 15.7% of protein
Raw token
HATPase_c:477:7.07e-30:595:120:1094 Response_reg#4
623-739 aa · 117 aa · 15.4% of protein
Raw token
Response_reg:623:7e-29:739:117:111- Raw architecture: dCache_1:160:0.0000379:277:118:195#HisKA:364:2.06e-17:430:67:64#HATPase_c:477:7.07e-30:595:120:109#Response_reg:623:7e-29:739:117:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040926785::NZ_JBCOHN010000002.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span119375-121654Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926785::NZ_JBCOHN010000002.1::G00008Context members
AB5834_RS01425
Partner locus tags
AB5834_RS01425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368222932.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5834_RS01425Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHN010000002.1Sequence record reported by the local genomic context database.
Genomic interval119 375-121 654 nt2 280 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119 375-121 654 ntGCF_040926785::NZ_JBCOHN010000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926785::NZ_JBCOHN010000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span119 375-121 654 nt2 280 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 375 nt121 654 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5834_RS01425GCF_040926785#AB5834_RS01425
HKHybridCurrent focus
119 375-121 654 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926785#AB5834_RS01425The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0648449
Simplified PFAM architecture for HKOC_0648449
PFAM domain coverage: 300 / 759 aa (39.5%)
1 aa759 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[365-430] | HATPase_c[477-594] | Response_reg[623-738]
- Domain count: 3
- Matched identifier: HKOC_0648449
- Positioned domains: HisKA 365-430 ; HATPase_c 477-594 ; Response_reg 623-738
Cluster members and taxonomy
Representative gene: GCF_040926785#AB5834_RS01425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926785
AssemblyASM4092678v1 · Scaffoldhaploid
Genome composition4 190 582 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 121 · HK 58 · RR 61CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key