1 sCache_like#1
35-129 aa · 95 aa · 17.1% of protein
Raw token
sCache_like:35:0.000000000365:129:102:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5834_RS01065
Histidine kinase, Classic
Blautia wexlerae · GCF_040926785
ClassHKTypeClassicLength555 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040926785#AB5834_RS01065Stable P2CS identifier used across views.
GenomeGCF_040926785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_9HisKAHATPase_c
Protein length555 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage363 / 555 aa (65.4%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa555 aa
Domain-by-domain annotation4 items
2 PAS_9#2
233-324 aa · 92 aa · 16.6% of protein
Raw token
PAS_9:233:0.00000996:324:101:1023 HisKA#3
332-397 aa · 66 aa · 11.9% of protein
Raw token
HisKA:332:3.5e-18:397:66:644 HATPase_c#4
441-550 aa · 110 aa · 19.8% of protein
Raw token
HATPase_c:441:2.26e-28:550:110:109- Raw architecture: sCache_like:35:0.000000000365:129:102:114#PAS_9:233:0.00000996:324:101:102#HisKA:332:3.5e-18:397:66:64#HATPase_c:441:2.26e-28:550:110:109
- Domain description: 1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040926785::NZ_JBCOHN010000002.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span46894-48561Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926785::NZ_JBCOHN010000002.1::G00006Context members
AB5834_RS01065
Partner locus tags
AB5834_RS01065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271742401.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5834_RS01065Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHN010000002.1Sequence record reported by the local genomic context database.
Genomic interval46 894-48 561 nt1 668 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 894-48 561 ntGCF_040926785::NZ_JBCOHN010000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926785::NZ_JBCOHN010000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span46 894-48 561 nt1 668 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 894 nt48 561 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5834_RS01065GCF_040926785#AB5834_RS01065
HKClassicCurrent focus
46 894-48 561 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301875#G4894_RS15990Use this link to inspect the representative gene detail.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1278689
Simplified PFAM architecture for HKOC_1278689
PFAM domain coverage: 269 / 555 aa (48.5%)
1 aa555 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[35-129] | HisKA[332-396] | HATPase_c[443-551]
- Domain count: 3
- Matched identifier: HKOC_1278689
- Positioned domains: sCache_like 35-129 ; HisKA 332-396 ; HATPase_c 443-551
Cluster members and taxonomy
Representative gene: GCF_013301875#G4894_RS15990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926785
AssemblyASM4092678v1 · Scaffoldhaploid
Genome composition4 190 582 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 121 · HK 58 · RR 61CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key