1 Response_reg#1
16-130 aa · 115 aa · 47.9% of protein
Raw token
Response_reg:16:1.01e-24:130:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5793_RS07065
Response regulator, unclassified
Clostridium paraputrificum · GCF_040926565
ClassRRTypeunclassifiedLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040926565#AB5793_RS07065Stable P2CS identifier used across views.
GenomeGCF_040926565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 240 aa (63.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 HTH_11#2
176-213 aa · 38 aa · 15.8% of protein
Raw token
HTH_11:176:0.000000527:213:38:52- Raw architecture: Response_reg:16:1.01e-24:130:115:111#HTH_11:176:0.000000527:213:38:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040926565::NZ_JBCOHX010000047.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19824-20547Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926565::NZ_JBCOHX010000047.1::G00016Context members
AB5793_RS07065
Partner locus tags
AB5793_RS07065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368259853.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5793_RS07065Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHX010000047.1Sequence record reported by the local genomic context database.
Genomic interval19 824-20 547 nt724 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 824-20 547 ntGCF_040926565::NZ_JBCOHX010000047.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926565::NZ_JBCOHX010000047.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHX010000047.1All displayed genes belong to this local TCS context.
Neighborhood span19 824-20 547 nt724 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 824 nt20 547 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5793_RS07065GCF_040926565#AB5793_RS07065
RRunclassifiedCurrent focus
19 824-20 547 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926565#AB5793_RS07065The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_112 domains in the representative PFAM annotation.
PFAM architecture for RROC_0901148
Simplified PFAM architecture for RROC_0901148
PFAM domain coverage: 154 / 240 aa (64.2%)
1 aa240 aa
Response_regHTH_11
- Simplified architecture: Response_reg + HTH_11
- Raw architecture: Response_reg[16-129] | HTH_11[177-216]
- Domain count: 2
- Matched identifier: RROC_0901148
- Positioned domains: Response_reg 16-129 ; HTH_11 177-216
Cluster members and taxonomy
Representative gene: GCF_040926565#AB5793_RS07065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_040926565
AssemblyASM4092656v1 · Scaffoldhaploid
Genome composition3 529 111 bp · 30,5% GCClostridium paraputrificum
Signal transduction countsGenes 65 · HK 31 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key