1 HisKA#1
87-152 aa · 66 aa · 21.2% of protein
Raw token
HisKA:87:0.0000000000000337:152:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5793_RS01815
Histidine kinase, Classic
Clostridium paraputrificum · GCF_040926565
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926565#AB5793_RS01815Stable P2CS identifier used across views.
GenomeGCF_040926565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 311 aa (56.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
198-307 aa · 110 aa · 35.4% of protein
Raw token
HATPase_c:198:6.7e-24:307:110:109- Raw architecture: HisKA:87:0.0000000000000337:152:66:64#HATPase_c:198:6.7e-24:307:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926565::NZ_JBCOHX010000008.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35438-37068Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926565::NZ_JBCOHX010000008.1::G00002Context members
AB5793_RS01815AB5793_RS01820
Partner locus tags
AB5793_RS01815AB5793_RS01820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055183561.1Primary protein accession used for annex mappings.
UniProt accessionA0A174R7N0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174R7N0_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5793_RS01815Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHX010000008.1Sequence record reported by the local genomic context database.
Genomic interval35 438-36 373 nt936 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 438-37 068 ntGCF_040926565::NZ_JBCOHX010000008.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926565::NZ_JBCOHX010000008.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHX010000008.1All displayed genes belong to this local TCS context.
Neighborhood span35 438-37 068 nt1 631 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 438 nt37 068 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5793_RS01815GCF_040926565#AB5793_RS01815
HKClassicCurrent focus
35 438-36 373 nt · Reverse (-)
AB5793_RS01820GCF_040926565#AB5793_RS01820
RROmpR
36 373-37 068 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS01920Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2876676
Simplified PFAM architecture for HKOC_2876676
PFAM domain coverage: 175 / 311 aa (56.3%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-152] | HATPase_c[199-307]
- Domain count: 2
- Matched identifier: HKOC_2876676
- Positioned domains: HisKA 87-152 ; HATPase_c 199-307
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS01920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_040926565
AssemblyASM4092656v1 · Scaffoldhaploid
Genome composition3 529 111 bp · 30,5% GCClostridium paraputrificum
Signal transduction countsGenes 65 · HK 31 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key