1 HAMP#1
165-234 aa · 70 aa · 15.2% of protein
Raw token
HAMP:165:8.95e-16:234:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS25990
Histidine kinase, Classic
Bacillus mycoides · GCF_040797025
ClassHKTypeClassicLength460 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040797025#AB2553_RS25990Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 460 aa (53.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.6% of protein
Raw token
HisKA:238:1.84e-16:304:67:643 HATPase_c#3
348-458 aa · 111 aa · 24.1% of protein
Raw token
HATPase_c:348:1.65e-34:458:111:109- Raw architecture: HAMP:165:8.95e-16:234:70:69#HisKA:238:1.84e-16:304:67:64#HATPase_c:348:1.65e-34:458:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040797025::NZ_JBFNPP010000031.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27703-29764Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_25990RefSeq proteinWP_367631313.1
Context group ID
GCF_040797025::NZ_JBFNPP010000031.1::G00060Context members
AB2553_RS25990AB2553_RS25995
Partner locus tags
AB2553_RS25990AB2553_RS25995
Partner old locus tags
AB2553_25990AB2553_25995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_367631313.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS25990Primary locus identifier stored in the genes table.
Old locus tagAB2553_25990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000031.1Sequence record reported by the local genomic context database.
Genomic interval27 703-29 085 nt1 383 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 703-29 764 ntGCF_040797025::NZ_JBFNPP010000031.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000031.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000031.1All displayed genes belong to this local TCS context.
Neighborhood span27 703-29 764 nt2 062 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 703 nt29 764 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB2553_RS25990GCF_040797025#AB2553_RS25990
HKClassicCurrent focus
27 703-29 085 nt · Reverse (-)
AB2553_RS25995GCF_040797025#AB2553_RS25995
RROmpR
29 087-29 764 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040797025#AB2553_RS25990The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1843130
Simplified PFAM architecture for HKOC_1843130
PFAM domain coverage: 227 / 460 aa (49.3%)
1 aa460 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-233] | HisKA[238-303] | HATPase_c[348-458]
- Domain count: 3
- Matched identifier: HKOC_1843130
- Positioned domains: HAMP 184-233 ; HisKA 238-303 ; HATPase_c 348-458
Cluster members and taxonomy
Representative gene: GCF_040797025#AB2553_RS25990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key