1 Response_reg#1
6-113 aa · 108 aa · 48.4% of protein
Raw token
Response_reg:6:1.31e-42:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS02790
Response regulator OmpR family
Bacillus mycoides · GCF_040797025
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040797025#AB2553_RS02790Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:4.39e-36:221:77:77- Raw architecture: Response_reg:6:1.31e-42:113:109:111#Trans_reg_C:148:4.39e-36:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040797025::NZ_JBFNPP010000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37221-39296Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_02790RefSeq proteinWP_061688809.1
Context group ID
GCF_040797025::NZ_JBFNPP010000002.1::G00004Context members
AB2553_RS02790AB2553_RS02795
Partner locus tags
AB2553_RS02790AB2553_RS02795
Partner old locus tags
AB2553_02790AB2553_02795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_061688809.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TTB4Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TTB4_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS02790Primary locus identifier stored in the genes table.
Old locus tagAB2553_02790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000002.1Sequence record reported by the local genomic context database.
Genomic interval37 221-37 892 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 221-39 296 ntGCF_040797025::NZ_JBFNPP010000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span37 221-39 296 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 221 nt39 296 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB2553_RS02790GCF_040797025#AB2553_RS02790
RROmpRCurrent focus
37 221-37 892 nt · Forward (+)
AB2553_RS02795GCF_040797025#AB2553_RS02795
HKClassic
37 896-39 296 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014585#BW897_RS10340Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1595963
Simplified PFAM architecture for RROC_1595963
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1595963
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_002014585#BW897_RS10340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key