1 Response_reg#1
4-112 aa · 109 aa · 49.3% of protein
Raw token
Response_reg:4:2.71e-32:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAA082_RS03345
Response regulator OmpR family
[Ruminococcus] torques · GCF_040097015
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040097015#AAA082_RS03345Stable P2CS identifier used across views.
GenomeGCF_040097015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 221 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 34.4% of protein
Raw token
Trans_reg_C:144:4.07e-32:219:78:77- Raw architecture: Response_reg:4:2.71e-32:112:110:111#Trans_reg_C:144:4.07e-32:219:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040097015::NZ_JBBNPG010000005.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91448-93141Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAA082_03375RefSeq proteinWP_009321542.1
Context group ID
GCF_040097015::NZ_JBBNPG010000005.1::G00008Context members
AAA082_RS03345AAA082_RS03350
Partner locus tags
AAA082_RS03345AAA082_RS03350
Partner old locus tags
AAA082_03375AAA082_03380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009321542.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAA082_RS03345Primary locus identifier stored in the genes table.
Old locus tagAAA082_03375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNPG010000005.1Sequence record reported by the local genomic context database.
Genomic interval91 448-92 113 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 448-93 141 ntGCF_040097015::NZ_JBBNPG010000005.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040097015::NZ_JBBNPG010000005.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNPG010000005.1All displayed genes belong to this local TCS context.
Neighborhood span91 448-93 141 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 448 nt93 141 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAA082_RS03345GCF_040097015#AAA082_RS03345
RROmpRCurrent focus
91 448-92 113 nt · Forward (+)
AAA082_RS03350GCF_040097015#AAA082_RS03350
HKClassic
92 116-93 141 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020563085#LI229_RS05620Use this link to inspect the representative gene detail.
PFAM architectureThiF + Response_reg + Trans_reg_C3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0033045
Simplified PFAM architecture for RROC_0033045
PFAM domain coverage: 300 / 684 aa (43.9%)
1 aa684 aa
ThiFResponse_regTrans_reg_C
- Simplified architecture: ThiF + Response_reg + Trans_reg_C
- Raw architecture: ThiF[294-408] | Response_reg[467-575] | Trans_reg_C[607-682]
- Domain count: 3
- Matched identifier: RROC_0033045
- Positioned domains: ThiF 294-408 ; Response_reg 467-575 ; Trans_reg_C 607-682
Cluster members and taxonomy
Representative gene: GCF_020563085#LI229_RS05620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_040097015
AssemblyASM4009701v1 · Contighaploid
Genome composition2 895 324 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 51 · HK 24 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key