1 Response_reg#1
3-113 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:3:2.72e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAA082_RS00220
Response regulator OmpR family
[Ruminococcus] torques · GCF_040097015
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040097015#AAA082_RS00220Stable P2CS identifier used across views.
GenomeGCF_040097015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 224 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-220 aa · 75 aa · 33.5% of protein
Raw token
Trans_reg_C:146:5.4e-34:220:76:77- Raw architecture: Response_reg:3:2.72e-36:113:111:111#Trans_reg_C:146:5.4e-34:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040097015::NZ_JBBNPG010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49897-51974Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAA082_00220RefSeq proteinWP_302241596.1
Context group ID
GCF_040097015::NZ_JBBNPG010000001.1::G00002Context members
AAA082_RS00220AAA082_RS00225
Partner locus tags
AAA082_RS00220AAA082_RS00225
Partner old locus tags
AAA082_00220AAA082_00225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_302241596.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAA082_RS00220Primary locus identifier stored in the genes table.
Old locus tagAAA082_00220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNPG010000001.1Sequence record reported by the local genomic context database.
Genomic interval49 897-50 571 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 897-51 974 ntGCF_040097015::NZ_JBBNPG010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040097015::NZ_JBBNPG010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNPG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span49 897-51 974 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 897 nt51 974 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAA082_RS00220GCF_040097015#AAA082_RS00220
RROmpRCurrent focus
49 897-50 571 nt · Forward (+)
AAA082_RS00225GCF_040097015#AAA082_RS00225
HKClassic
50 568-51 974 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040097015#AAA082_RS00220The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1571635
Simplified PFAM architecture for RROC_1571635
PFAM domain coverage: 186 / 224 aa (83.0%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1571635
- Positioned domains: Response_reg 3-113 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_040097015#AAA082_RS00220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_040097015
AssemblyASM4009701v1 · Contighaploid
Genome composition2 895 324 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 51 · HK 24 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key