1 Response_reg#1
467-575 aa · 109 aa · 15.9% of protein
Raw token
Response_reg:467:6.65e-31:575:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI229_RS05620
Response regulator OmpR family
[Ruminococcus] torques · GCF_020563085
ClassRRTypeOmpRLength684 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020563085#LI229_RS05620Stable P2CS identifier used across views.
GenomeGCF_020563085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length684 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 684 aa (27.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa684 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
607-682 aa · 76 aa · 11.1% of protein
Raw token
Trans_reg_C:607:2.84e-31:682:78:77- Raw architecture: Response_reg:467:6.65e-31:575:110:111#Trans_reg_C:607:2.84e-31:682:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020563085::NZ_JAJCPV010000008.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span54589-56643Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI229_05585RefSeq proteinWP_227077085.1
Context group ID
GCF_020563085::NZ_JAJCPV010000008.1::G00027Context members
LI229_RS05620
Partner locus tags
LI229_RS05620
Partner old locus tags
LI229_05585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227077085.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI229_RS05620Primary locus identifier stored in the genes table.
Old locus tagLI229_05585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCPV010000008.1Sequence record reported by the local genomic context database.
Genomic interval54 589-56 643 nt2 055 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 589-56 643 ntGCF_020563085::NZ_JAJCPV010000008.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020563085::NZ_JAJCPV010000008.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCPV010000008.1All displayed genes belong to this local TCS context.
Neighborhood span54 589-56 643 nt2 055 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 589 nt56 643 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LI229_RS05620GCF_020563085#LI229_RS05620
RROmpRCurrent focus
54 589-56 643 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020563085#LI229_RS05620The current gene is the representative for this cluster.
PFAM architectureThiF + Response_reg + Trans_reg_C3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0033045
Simplified PFAM architecture for RROC_0033045
PFAM domain coverage: 300 / 684 aa (43.9%)
1 aa684 aa
ThiFResponse_regTrans_reg_C
- Simplified architecture: ThiF + Response_reg + Trans_reg_C
- Raw architecture: ThiF[294-408] | Response_reg[467-575] | Trans_reg_C[607-682]
- Domain count: 3
- Matched identifier: RROC_0033045
- Positioned domains: ThiF 294-408 ; Response_reg 467-575 ; Trans_reg_C 607-682
Cluster members and taxonomy
Representative gene: GCF_020563085#LI229_RS05620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_020563085
AssemblyASM2056308v1 · Contighaploid
Genome composition2 791 089 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 48 · HK 22 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key