1 HAMP#1
198-265 aa · 68 aa · 13.2% of protein
Raw token
HAMP:198:0.00000000000000226:265:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAT60_RS01760
Histidine kinase, Classic
Blautia wexlerae · GCF_040095395
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040095395#AAAT60_RS01760Stable P2CS identifier used across views.
GenomeGCF_040095395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 514 aa (47.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation3 items
2 HisKA#2
291-358 aa · 68 aa · 13.2% of protein
Raw token
HisKA:291:0.00000000000000144:358:68:643 HATPase_c#3
403-511 aa · 109 aa · 21.2% of protein
Raw token
HATPase_c:403:1.6e-19:511:110:109- Raw architecture: HAMP:198:0.00000000000000226:265:68:69#HisKA:291:0.00000000000000144:358:68:64#HATPase_c:403:1.6e-19:511:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040095395::NZ_JBBNFY010000003.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46313-48534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAT60_01765RefSeq proteinWP_118586449.1
Context group ID
GCF_040095395::NZ_JBBNFY010000003.1::G00036Context members
AAAT60_RS01760AAAT60_RS01765
Partner locus tags
AAAT60_RS01760AAAT60_RS01765
Partner old locus tags
AAAT60_01765AAAT60_01770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118586449.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAT60_RS01760Primary locus identifier stored in the genes table.
Old locus tagAAAT60_01765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNFY010000003.1Sequence record reported by the local genomic context database.
Genomic interval46 313-47 857 nt1 545 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 313-48 534 ntGCF_040095395::NZ_JBBNFY010000003.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095395::NZ_JBBNFY010000003.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNFY010000003.1All displayed genes belong to this local TCS context.
Neighborhood span46 313-48 534 nt2 222 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 313 nt48 534 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAT60_RS01760GCF_040095395#AAAT60_RS01760
HKClassicCurrent focus
46 313-47 857 nt · Reverse (-)
AAAT60_RS01765GCF_040095395#AAAT60_RS01765
RROmpR
47 854-48 534 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668165#I4V44_RS10870Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1412741
Simplified PFAM architecture for HKOC_1412741
PFAM domain coverage: 228 / 514 aa (44.4%)
1 aa514 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[215-265] | HisKA[291-358] | HATPase_c[404-512]
- Domain count: 3
- Matched identifier: HKOC_1412741
- Positioned domains: HAMP 215-265 ; HisKA 291-358 ; HATPase_c 404-512
Cluster members and taxonomy
Representative gene: GCF_015668165#I4V44_RS10870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040095395
AssemblyASM4009539v1 · Contighaploid
Genome composition4 140 334 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 58 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key