1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:7.93e-29:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAT60_RS01365
Response regulator OmpR family
Blautia wexlerae · GCF_040095395
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040095395#AAAT60_RS01365Stable P2CS identifier used across views.
GenomeGCF_040095395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 32.8% of protein
Raw token
Trans_reg_C:147:1.56e-29:221:75:77- Raw architecture: Response_reg:4:7.93e-29:113:111:111#Trans_reg_C:147:1.56e-29:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040095395::NZ_JBBNFY010000002.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115119-117049Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAT60_01370RefSeq proteinWP_118565989.1
Context group ID
GCF_040095395::NZ_JBBNFY010000002.1::G00031Context members
AAAT60_RS01365AAAT60_RS01370
Partner locus tags
AAAT60_RS01365AAAT60_RS01370
Partner old locus tags
AAAT60_01370AAAT60_01375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118565989.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAT60_RS01365Primary locus identifier stored in the genes table.
Old locus tagAAAT60_01370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNFY010000002.1Sequence record reported by the local genomic context database.
Genomic interval115 119-115 808 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span115 119-117 049 ntGCF_040095395::NZ_JBBNFY010000002.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095395::NZ_JBBNFY010000002.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNFY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span115 119-117 049 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 119 nt117 049 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAT60_RS01365GCF_040095395#AAAT60_RS01365
RROmpRCurrent focus
115 119-115 808 nt · Forward (+)
AAAT60_RS01370GCF_040095395#AAAT60_RS01370
HKClassic
115 784-117 049 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299555#G4441_RS07720Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1268066
Simplified PFAM architecture for RROC_1268066
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1268066
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_013299555#G4441_RS07720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040095395
AssemblyASM4009539v1 · Contighaploid
Genome composition4 140 334 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 58 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key