1 HAMP#1
198-265 aa · 68 aa · 13.2% of protein
Raw token
HAMP:198:0.00000000000000226:265:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V44_RS10870
Histidine kinase, Classic
Blautia sp. 1001283B150304_161114_C9 · GCF_015668165
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015668165#I4V44_RS10870Stable P2CS identifier used across views.
GenomeGCF_015668165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 514 aa (47.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation3 items
2 HisKA#2
291-358 aa · 68 aa · 13.2% of protein
Raw token
HisKA:291:0.00000000000000144:358:68:643 HATPase_c#3
403-511 aa · 109 aa · 21.2% of protein
Raw token
HATPase_c:403:1.6e-19:511:110:109- Raw architecture: HAMP:198:0.00000000000000226:265:68:69#HisKA:291:0.00000000000000144:358:68:64#HATPase_c:403:1.6e-19:511:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015668165::NZ_JADPGO010000019.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27289-29510Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668165::NZ_JADPGO010000019.1::G00008Context members
I4V44_RS10865I4V44_RS10870
Partner locus tags
I4V44_RS10865I4V44_RS10870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118586449.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V44_RS10870Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGO010000019.1Sequence record reported by the local genomic context database.
Genomic interval27 966-29 510 nt1 545 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 289-29 510 ntGCF_015668165::NZ_JADPGO010000019.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668165::NZ_JADPGO010000019.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGO010000019.1All displayed genes belong to this local TCS context.
Neighborhood span27 289-29 510 nt2 222 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 289 nt29 510 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V44_RS10865GCF_015668165#I4V44_RS10865
RROmpR
27 289-27 969 nt · Forward (+)
I4V44_RS10870GCF_015668165#I4V44_RS10870
HKClassicCurrent focus
27 966-29 510 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668165#I4V44_RS10870The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1412741
Simplified PFAM architecture for HKOC_1412741
PFAM domain coverage: 228 / 514 aa (44.4%)
1 aa514 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[215-265] | HisKA[291-358] | HATPase_c[404-512]
- Domain count: 3
- Matched identifier: HKOC_1412741
- Positioned domains: HAMP 215-265 ; HisKA 291-358 ; HATPase_c 404-512
Cluster members and taxonomy
Representative gene: GCF_015668165#I4V44_RS10870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 821 · GCF_015668165
AssemblyASM1566816v1 · Scaffoldhaploid
Genome composition3 791 615 bp · 41,5% GCBlautia sp. 1001283B150304_161114_C9
Signal transduction countsGenes 106 · HK 54 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key