1 Response_reg#1
6-115 aa · 110 aa · 74.3% of protein
Raw token
Response_reg:6:1.59e-33:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCO65_RS00825
Response regulator, CheY family
Clostridioides difficile · GCF_038753515
ClassRRTypeCheYLength148 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_038753515#ABCO65_RS00825Stable P2CS identifier used across views.
GenomeGCF_038753515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length148 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 148 aa (74.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa148 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:1.59e-33:115:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_038753515::NZ_JBBBLB010000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span141743-142187Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038753515::NZ_JBBBLB010000001.1::G00005Context members
ABCO65_RS00825
Partner locus tags
ABCO65_RS00825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_343089579.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCO65_RS00825Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBLB010000001.1Sequence record reported by the local genomic context database.
Genomic interval141 743-142 187 nt445 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span141 743-142 187 ntGCF_038753515::NZ_JBBBLB010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038753515::NZ_JBBBLB010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBLB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span141 743-142 187 nt445 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
141 743 nt142 187 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABCO65_RS00825GCF_038753515#ABCO65_RS00825
RRCheYCurrent focus
141 743-142 187 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038753515#ABCO65_RS00825The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2237924
Simplified PFAM architecture for RROC_2237924
PFAM domain coverage: 109 / 148 aa (73.6%)
1 aa148 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-114]
- Domain count: 1
- Matched identifier: RROC_2237924
- Positioned domains: Response_reg 6-114
Cluster members and taxonomy
Representative gene: GCF_038753515#ABCO65_RS00825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038753515
AssemblyASM3875351v1 · Scaffoldhaploid
Genome composition4 270 244 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 50 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key