1 HisKA#1
428-494 aa · 67 aa · 10.3% of protein
Raw token
HisKA:428:3.38e-18:494:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCO65_RS00835
Histidine kinase, Classic
Clostridioides difficile · GCF_038753515
ClassHKTypeClassicLength648 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_038753515#ABCO65_RS00835Stable P2CS identifier used across views.
GenomeGCF_038753515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length648 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 648 aa (26.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa648 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
541-645 aa · 105 aa · 16.2% of protein
Raw token
HATPase_c:541:0.000000000257:645:110:109- Raw architecture: HisKA:428:3.38e-18:494:67:64#HATPase_c:541:0.000000000257:645:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_038753515::NZ_JBBBLB010000001.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span142820-144767Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038753515::NZ_JBBBLB010000001.1::G00006Context members
ABCO65_RS00835
Partner locus tags
ABCO65_RS00835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_343089580.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCO65_RS00835Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBLB010000001.1Sequence record reported by the local genomic context database.
Genomic interval142 820-144 767 nt1 948 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span142 820-144 767 ntGCF_038753515::NZ_JBBBLB010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038753515::NZ_JBBBLB010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBLB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span142 820-144 767 nt1 948 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
142 820 nt144 767 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABCO65_RS00835GCF_038753515#ABCO65_RS00835
HKClassicCurrent focus
142 820-144 767 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0212650Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0598846
Simplified PFAM architecture for HKOC_0598846
PFAM domain coverage: 172 / 778 aa (22.1%)
1 aa778 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[558-624] | HATPase_c[671-775]
- Domain count: 2
- Matched identifier: HKOC_0598846
- Positioned domains: HisKA 558-624 ; HATPase_c 671-775
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0212650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038753515
AssemblyASM3875351v1 · Scaffoldhaploid
Genome composition4 270 244 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 50 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key