1 Response_reg#1
4-95 aa · 92 aa · 95.8% of protein
Raw token
Response_reg:4:5.93e-21:95:92:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCO65_RS00355
Response regulator, CheY family
Clostridioides difficile · GCF_038753515
ClassRRTypeCheYLength96 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038753515#ABCO65_RS00355Stable P2CS identifier used across views.
GenomeGCF_038753515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length96 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage92 / 96 aa (95.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa96 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:5.93e-21:95:92:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038753515::NZ_JBBBLB010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55413-56346Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038753515::NZ_JBBBLB010000001.1::G00003Context members
ABCO65_RS00355ABCO65_RS00360
Partner locus tags
ABCO65_RS00355ABCO65_RS00360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_343089540.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCO65_RS00355Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBLB010000001.1Sequence record reported by the local genomic context database.
Genomic interval55 413-55 702 nt290 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 413-56 346 ntGCF_038753515::NZ_JBBBLB010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038753515::NZ_JBBBLB010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBLB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span55 413-56 346 nt934 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 413 nt56 346 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABCO65_RS00355GCF_038753515#ABCO65_RS00355
RRCheYCurrent focus
55 413-55 702 nt · Reverse (-)
ABCO65_RS00360GCF_038753515#ABCO65_RS00360
HKClassic
55 707-56 346 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038753515#ABCO65_RS00355The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2472816
Simplified PFAM architecture for RROC_2472816
PFAM domain coverage: 89 / 96 aa (92.7%)
1 aa96 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-92]
- Domain count: 1
- Matched identifier: RROC_2472816
- Positioned domains: Response_reg 4-92
Cluster members and taxonomy
Representative gene: GCF_038753515#ABCO65_RS00355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038753515
AssemblyASM3875351v1 · Scaffoldhaploid
Genome composition4 270 244 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 50 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key